DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
AGTSS
Uniprot ID:
Q9Y5A7
Source protein:
NEDD8 ultimate buster 1
Source gene:
NUB1
Class:
DEG_SPOP_SBC_1
Location:
556:560
E3 ligase:
SPOP
DEGRON score:
0.9912
ASA_SCORE:
79.2
COIL:
0.9348
CONS_SCORE:
0.3618
DSS_SCORE:
0.8614
HELIX:
0.0518
FCONS_SCORE:
1.0396
RIG_SCORE:
0.4916
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L550I
TCGA-CV-7261
HNSC
TCGA
AGTSS
DEG_SPOP_SBC_1
0.1667
p.L550I
DO15062
HNSC
ICGC
AGTSS
DEG_SPOP_SBC_1
0.1667
p.P559T
TCGA-DK-A3IN
BLCA
TCGA
AGTSS
DEG_SPOP_SBC_1
0.7031
p.P559T
DO455
BLCA
ICGC
AGTSS
DEG_SPOP_SBC_1
0.7031
p.G554E
TCGA-EE-A182
SKCM
TCGA
AGTSS
DEG_SPOP_SBC_1
0.2778
p.G554E
DO37814
SKCM
ICGC
AGTSS
DEG_SPOP_SBC_1
0.2778
p.E566Q
TCGA-HD-7229
HNSC
TCGA
AGTSS
DEG_SPOP_SBC_1
0.1667
p.E566Q
DO15479
HNSC
ICGC
AGTSS
DEG_SPOP_SBC_1
0.1667
p.S564L
DO222817
BTCA
ICGC
AGTSS
DEG_SPOP_SBC_1
0.2222
p.Q548R
DO35242
PACA
ICGC
AGTSS
DEG_SPOP_SBC_1
0.1111
p.L563R
SIDM00370
T-Lymphoblastic Leukemia
GDSC
AGTSS
DEG_SPOP_SBC_1
0.25
p.L563R
ACH-000197
Leukemia
CCLE
AGTSS
DEG_SPOP_SBC_1
0.25
p.A547S
SIDM01129
Small Cell Lung Carcinoma
GDSC
AGTSS
DEG_SPOP_SBC_1
0.0833
p.A547S
ACH-000816
Lung Cancer
CCLE
AGTSS
DEG_SPOP_SBC_1
0.0833
p.A547S
NCI-H524
lung
COSMIC
AGTSS
DEG_SPOP_SBC_1
0.0833
p.A547T
SIDM00596
Endometrial Carcinoma
GDSC
AGTSS
DEG_SPOP_SBC_1
0.0833
p.A547T
SIDM01133
Other Solid Cancers
GDSC
AGTSS
DEG_SPOP_SBC_1
0.0833
p.A547T
ACH-001517
Endometrial/Uterine Cancer
CCLE
AGTSS
DEG_SPOP_SBC_1
0.0833
p.A547T
ACH-002177
Lung Cancer
CCLE
AGTSS
DEG_SPOP_SBC_1
0.0833
p.A547T
NCI-H835
lung
COSMIC
AGTSS
DEG_SPOP_SBC_1
0.0833
p.A547T
HEC-1
endometrium
COSMIC
AGTSS
DEG_SPOP_SBC_1
0.0833
p.P562L
SIDM01709
Melanoma
GDSC
AGTSS
DEG_SPOP_SBC_1
0.2778
p.P562L
ACH-000275
Non-Cancerous
CCLE
AGTSS
DEG_SPOP_SBC_1
0.2778
p.E565K
SNU-81
large_intestine
COSMIC
AGTSS
DEG_SPOP_SBC_1
0.1944
p.T550M
SNU-175
large_intestine
COSMIC
AGTSS
DEG_SPOP_SBC_1
0.1667
p.T560M
SNU-175
large_intestine
COSMIC
AGTSS
DEG_SPOP_SBC_1
0.7423
Drug responses associated with NUB1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of AGTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60244
Mediator of RNA polymerase II transcription subunit 14
DEG_SPOP_SBC_1
1147:1151
AGTSS
SPOP
0.9972
More...
O95073
Fibrinogen silencer-binding protein
DEG_SPOP_SBC_1
134:138
AGTSS
SPOP
0.9917
More...
O95249
Golgi SNAP receptor complex member 1
DEG_SPOP_SBC_1
3:7
AGTSS
SPOP
0.9984
More...
P16070
CD44 antigen
DEG_SPOP_SBC_1
265:269
AGTSS
SPOP
0.9527
More...
P82094
TATA element modulatory factor
DEG_SPOP_SBC_1
166:170
AGTSS
SPOP
0.9993
More...
Q03164
Histone-lysine N-methyltransferase 2A
DEG_SPOP_SBC_1
724:728
AGTSS
SPOP
0.999
More...
Q5VT06
Centrosome-associated protein 350
DEG_SPOP_SBC_1
1271:1275
AGTSS
SPOP
0.9877
More...
Q6ZP82
Coiled-coil domain-containing protein 141
DEG_SPOP_SBC_1
1253:1257
AGTSS
SPOP
0.9861
More...
Q7Z5P9
Mucin-19
DEG_SPOP_SBC_1
3117:3121
AGTSS
SPOP
0.9982
More...
Q8TEH3
DENN domain-containing protein 1A
DEG_SPOP_SBC_1
775:779
AGTSS
SPOP
0.8732
More...
Q8WV16
DDB1- and CUL4-associated factor 4
DEG_SPOP_SBC_1
58:62
AGTSS
SPOP
0.9954
More...
Q99990
Transcription cofactor vestigial-like protein 1
DEG_SPOP_SBC_1
137:141
AGTSS
SPOP
0.8905
More...
Q9HCC9
Lateral signaling target protein 2 homolog
DEG_SPOP_SBC_1
474:478
AGTSS
SPOP
0.7998
More...
Q9HCR9
Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A
DEG_SPOP_SBC_1
56:60
AGTSS
SPOP
0.8678
More...
Q9P0V3
SH3 domain-binding protein 4
DEG_SPOP_SBC_1
197:201
AGTSS
SPOP
0.9517
More...
Q9P212
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1
DEG_SPOP_SBC_1
1162:1166
AGTSS
SPOP
0.9841
More...
Q9Y572
Receptor-interacting serine/threonine-protein kinase 3
DEG_SPOP_SBC_1
385:389
AGTSS
SPOP
0.9713
More...
Q9Y5A7
NEDD8 ultimate buster 1
DEG_SPOP_SBC_1
556:560
AGTSS
SPOP
0.9912
More...
Q5VWJ9
Sorting nexin-30
DEG_SPOP_SBC_1
63:67
AGTSS
SPOP
0.9979
More...
Q5JYT7
Uncharacterized protein KIAA1755
DEG_SPOP_SBC_1
294:298
AGTSS
SPOP
0.9974
More...
Q8N4B5
Proline-rich protein 18
DEG_SPOP_SBC_1
119:123
AGTSS
SPOP
0.9888
More...
Q9H6K5
Proline-rich protein 36
DEG_SPOP_SBC_1
83:87
AGTSS
SPOP
0.9884
More...