DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PDTST
Uniprot ID:
P52756
Source protein:
RNA-binding protein 5
Source gene:
RBM5
Class:
DEG_SPOP_SBC_1
Location:
457:461
E3 ligase:
SPOP
DEGRON score:
0.9481
ASA_SCORE:
62.16
COIL:
0.759
CONS_SCORE:
0.2972
DSS_SCORE:
0.4517
HELIX:
0.0778
FCONS_SCORE:
0.7939
RIG_SCORE:
0.7696
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E466V
TCGA-17-Z033
LUAD
TCGA
PDTST
DEG_SPOP_SBC_1
0.1944
p.D458N
TCGA-CK-4951
COAD
TCGA
PDTST
DEG_SPOP_SBC_1
0.5821
p.D458N
DO10582
COAD
ICGC
PDTST
DEG_SPOP_SBC_1
0.5821
p.Q463K
TCGA-EE-A183
SKCM
TCGA
PDTST
DEG_SPOP_SBC_1
0.2778
p.Q463K
DO37715
SKCM
ICGC
PDTST
DEG_SPOP_SBC_1
0.2778
p.G447S
DO223439
CLLE
ICGC
PDTST
DEG_SPOP_SBC_1
0.0556
p.Y462D
DO228932
COCA
ICGC
PDTST
DEG_SPOP_SBC_1
0.3056
p.G451C
DO228948
LICA
ICGC
PDTST
DEG_SPOP_SBC_1
0.1667
p.G451C
DO229029
LICA
ICGC
PDTST
DEG_SPOP_SBC_1
0.1667
p.K453T
DO227633
PACA
ICGC
PDTST
DEG_SPOP_SBC_1
0.3333
p.Y471H
DO229538
PRAD
ICGC
PDTST
DEG_SPOP_SBC_1
0.0556
p.D465G
DO229211
THCA
ICGC
PDTST
DEG_SPOP_SBC_1
0.2222
p.P457S
SIDM00534
Colorectal Carcinoma
GDSC
PDTST
DEG_SPOP_SBC_1
0.6752
p.P457S
ACH-000986
Colon/Colorectal Cancer
CCLE
PDTST
DEG_SPOP_SBC_1
0.6752
p.P457S
HT-115
large_intestine
COSMIC
PDTST
DEG_SPOP_SBC_1
0.6752
Drug responses associated with RBM5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PDTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P46821
Microtubule-associated protein 1B
DEG_SPOP_SBC_1
2035:2039
PDTST
SPOP
0.9975
More...
P52756
RNA-binding protein 5
DEG_SPOP_SBC_1
457:461
PDTST
SPOP
0.9481
More...
Q7Z7G8
Intermembrane lipid transfer protein VPS13B
DEG_SPOP_SBC_1
1274:1278
PDTST
SPOP
0.8975
More...
Q8NDL9
Cytosolic carboxypeptidase-like protein 5
DEG_SPOP_SBC_1
229:233
PDTST
SPOP
0.8141
More...
Q8WZ75
Roundabout homolog 4
DEG_SPOP_SBC_1
576:580
PDTST
SPOP
0.9187
More...
Q92794
Histone acetyltransferase KAT6A
DEG_SPOP_SBC_1
1140:1144
PDTST
SPOP
0.9558
More...
Q92954
Proteoglycan 4
DEG_SPOP_SBC_1
236:240
PDTST
SPOP
0.9814
More...
Q96GD3
Polycomb protein SCMH1
DEG_SPOP_SBC_1
337:341
PDTST
SPOP
0.9895
More...
Q96LR2
Leucine rich adaptor protein 1
DEG_SPOP_SBC_1
131:135
PDTST
SPOP
0.9852
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SPOP_SBC_1
676:680
PDTST
SPOP
0.9536
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SPOP_SBC_1
801:805
PDTST
SPOP
0.9687
More...
Q9UFD9
RIMS-binding protein 3A
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.9775
More...
A6NJZ7
RIMS-binding protein 3C
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.5006
More...
A6NNM3
RIMS-binding protein 3B
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.5384
More...
Q8N9M1
Uncharacterized protein C19orf47
DEG_SPOP_SBC_1
160:164
PDTST
SPOP
0.9381
More...