DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
PDTST
Uniprot ID:
Q8N9M1
Source protein:
Uncharacterized protein C19orf47
Source gene:
C19orf47
Class:
DEG_SPOP_SBC_1
Location:
160:164
E3 ligase:
SPOP
DEGRON score:
0.9381
ASA_SCORE:
92.2
COIL:
0.9296
CONS_SCORE:
0.3462
DSS_SCORE:
0.729
HELIX:
0.0408
FCONS_SCORE:
0.8315
RIG_SCORE:
0.6068
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R157H
DO218693
GACA
ICGC
PDTST
DEG_SPOP_SBC_1
0.25
p.Q163K
DO229035
LICA
ICGC
PDTST
DEG_SPOP_SBC_1
0.6944
p.L169F
DO222653
MELA
ICGC
PDTST
DEG_SPOP_SBC_1
0.1944
p.R157S
DO37896
SKCM
ICGC
PDTST
DEG_SPOP_SBC_1
0.25
p.R155C
DO38619
STAD
ICGC
PDTST
DEG_SPOP_SBC_1
0.6389
p.T172M
DO38268
STAD
ICGC
PDTST
DEG_SPOP_SBC_1
0.5556
p.K167N
DO52412
UCEC
ICGC
PDTST
DEG_SPOP_SBC_1
0.25
p.Q164H
DO52402
UCEC
ICGC
PDTST
DEG_SPOP_SBC_1
0.7582
p.R155H
DO42504
UCEC
ICGC
PDTST
DEG_SPOP_SBC_1
0.6389
p.R155H
DO41452
UCEC
ICGC
PDTST
DEG_SPOP_SBC_1
0.6389
p.S168L
SIDM02026
Colorectal Carcinoma
GDSC
PDTST
DEG_SPOP_SBC_1
0.2222
p.S168L
SIDM00390
T-Cell Non-Hodgkin's Lymphoma
GDSC
PDTST
DEG_SPOP_SBC_1
0.2222
p.S168L
ACH-000664
Lymphoma
CCLE
PDTST
DEG_SPOP_SBC_1
0.2222
p.R159L
SIDM01194
Hepatocellular Carcinoma
GDSC
PDTST
DEG_SPOP_SBC_1
0.3056
p.P160L
SIDM00217
Colorectal Carcinoma
GDSC
PDTST
DEG_SPOP_SBC_1
0.7582
p.P160L
ACH-000999
Colon/Colorectal Cancer
CCLE
PDTST
DEG_SPOP_SBC_1
0.7582
Drug responses associated with C19orf47 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PDTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P46821
Microtubule-associated protein 1B
DEG_SPOP_SBC_1
2035:2039
PDTST
SPOP
0.9975
More...
P52756
RNA-binding protein 5
DEG_SPOP_SBC_1
457:461
PDTST
SPOP
0.9481
More...
Q7Z7G8
Intermembrane lipid transfer protein VPS13B
DEG_SPOP_SBC_1
1274:1278
PDTST
SPOP
0.8975
More...
Q8NDL9
Cytosolic carboxypeptidase-like protein 5
DEG_SPOP_SBC_1
229:233
PDTST
SPOP
0.8141
More...
Q8WZ75
Roundabout homolog 4
DEG_SPOP_SBC_1
576:580
PDTST
SPOP
0.9187
More...
Q92794
Histone acetyltransferase KAT6A
DEG_SPOP_SBC_1
1140:1144
PDTST
SPOP
0.9558
More...
Q92954
Proteoglycan 4
DEG_SPOP_SBC_1
236:240
PDTST
SPOP
0.9814
More...
Q96GD3
Polycomb protein SCMH1
DEG_SPOP_SBC_1
337:341
PDTST
SPOP
0.9895
More...
Q96LR2
Leucine rich adaptor protein 1
DEG_SPOP_SBC_1
131:135
PDTST
SPOP
0.9852
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SPOP_SBC_1
676:680
PDTST
SPOP
0.9536
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SPOP_SBC_1
801:805
PDTST
SPOP
0.9687
More...
Q9UFD9
RIMS-binding protein 3A
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.9775
More...
A6NJZ7
RIMS-binding protein 3C
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.5006
More...
A6NNM3
RIMS-binding protein 3B
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.5384
More...
Q8N9M1
Uncharacterized protein C19orf47
DEG_SPOP_SBC_1
160:164
PDTST
SPOP
0.9381
More...