DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PDTST
Uniprot ID:
Q8NDL9
Source protein:
Cytosolic carboxypeptidase-like protein 5
Source gene:
AGBL5
Class:
DEG_SPOP_SBC_1
Location:
229:233
E3 ligase:
SPOP
DEGRON score:
0.8141
ASA_SCORE:
81.68
COIL:
0.9128
CONS_SCORE:
0.5221
DSS_SCORE:
0.4424
HELIX:
0.0594
FCONS_SCORE:
1.0435
RIG_SCORE:
0.7323
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R223H
TCGA-A6-6648
COAD
TCGA
PDTST
DEG_SPOP_SBC_1
0.1667
p.R223H
TCGA-CM-4746
COAD
TCGA
PDTST
DEG_SPOP_SBC_1
0.1667
p.R223H
TCGA-DM-A1HB
COAD
TCGA
PDTST
DEG_SPOP_SBC_1
0.1667
p.R223H
TCGA-KK-A6E6
PRAD
TCGA
PDTST
DEG_SPOP_SBC_1
0.1667
p.R223H
DO10196
COAD
ICGC
PDTST
DEG_SPOP_SBC_1
0.1667
p.R223H
DO7882
COAD
ICGC
PDTST
DEG_SPOP_SBC_1
0.1667
p.R223H
DO51361
PRAD
ICGC
PDTST
DEG_SPOP_SBC_1
0.1667
p.R238C
TCGA-D1-A17Q
UCEC
TCGA
PDTST
DEG_SPOP_SBC_1
0.1944
p.R238C
DO41903
UCEC
ICGC
PDTST
DEG_SPOP_SBC_1
0.1944
p.A240V
TCGA-DU-6392
LGG
TCGA
PDTST
DEG_SPOP_SBC_1
0.1389
p.A240V
DO22237
LGG
ICGC
PDTST
DEG_SPOP_SBC_1
0.1389
p.R238S
TCGA-EE-A20F
SKCM
TCGA
PDTST
DEG_SPOP_SBC_1
0.1944
p.R238S
DO37961
SKCM
ICGC
PDTST
DEG_SPOP_SBC_1
0.1944
p.P229S
DO229061
LICA
ICGC
PDTST
DEG_SPOP_SBC_1
0.6752
p.R223L
DO229009
LICA
ICGC
PDTST
DEG_SPOP_SBC_1
0.1667
p.R238H
SIDM00541
Colorectal Carcinoma
GDSC
PDTST
DEG_SPOP_SBC_1
0.1944
p.R220Q
SIDM01111
Ewing's Sarcoma
GDSC
PDTST
DEG_SPOP_SBC_1
0.0833
p.R220Q
ACH-000087
Bone Cancer
CCLE
PDTST
DEG_SPOP_SBC_1
0.0833
p.R220Q
SK-ES-1
bone
COSMIC
PDTST
DEG_SPOP_SBC_1
0.0833
Drug responses associated with AGBL5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PDTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P46821
Microtubule-associated protein 1B
DEG_SPOP_SBC_1
2035:2039
PDTST
SPOP
0.9975
More...
P52756
RNA-binding protein 5
DEG_SPOP_SBC_1
457:461
PDTST
SPOP
0.9481
More...
Q7Z7G8
Intermembrane lipid transfer protein VPS13B
DEG_SPOP_SBC_1
1274:1278
PDTST
SPOP
0.8975
More...
Q8NDL9
Cytosolic carboxypeptidase-like protein 5
DEG_SPOP_SBC_1
229:233
PDTST
SPOP
0.8141
More...
Q8WZ75
Roundabout homolog 4
DEG_SPOP_SBC_1
576:580
PDTST
SPOP
0.9187
More...
Q92794
Histone acetyltransferase KAT6A
DEG_SPOP_SBC_1
1140:1144
PDTST
SPOP
0.9558
More...
Q92954
Proteoglycan 4
DEG_SPOP_SBC_1
236:240
PDTST
SPOP
0.9814
More...
Q96GD3
Polycomb protein SCMH1
DEG_SPOP_SBC_1
337:341
PDTST
SPOP
0.9895
More...
Q96LR2
Leucine rich adaptor protein 1
DEG_SPOP_SBC_1
131:135
PDTST
SPOP
0.9852
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SPOP_SBC_1
676:680
PDTST
SPOP
0.9536
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SPOP_SBC_1
801:805
PDTST
SPOP
0.9687
More...
Q9UFD9
RIMS-binding protein 3A
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.9775
More...
A6NJZ7
RIMS-binding protein 3C
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.5006
More...
A6NNM3
RIMS-binding protein 3B
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.5384
More...
Q8N9M1
Uncharacterized protein C19orf47
DEG_SPOP_SBC_1
160:164
PDTST
SPOP
0.9381
More...