DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PDTST
Uniprot ID:
Q8WZ75
Source protein:
Roundabout homolog 4
Source gene:
ROBO4
Class:
DEG_SPOP_SBC_1
Location:
576:580
E3 ligase:
SPOP
DEGRON score:
0.9187
ASA_SCORE:
49.4
COIL:
0.7118
CONS_SCORE:
0.6747
DSS_SCORE:
0.3762
HELIX:
0.0524
FCONS_SCORE:
1.0558
RIG_SCORE:
0.7347
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D566N
TCGA-86-8281
LUAD
TCGA
PDTST
DEG_SPOP_SBC_1
0.0556
p.D566N
DO26318
LUAD
ICGC
PDTST
DEG_SPOP_SBC_1
0.0556
p.I586M
TCGA-DR-A0ZM
CESC
TCGA
PDTST
DEG_SPOP_SBC_1
0.1667
p.I586M
DO6254
CESC
ICGC
PDTST
DEG_SPOP_SBC_1
0.1667
p.G571C
TCGA-EO-A22R
UCEC
TCGA
PDTST
DEG_SPOP_SBC_1
0.1944
p.G571C
DO42713
UCEC
ICGC
PDTST
DEG_SPOP_SBC_1
0.1944
p.A587V
DO233737
GACA
ICGC
PDTST
DEG_SPOP_SBC_1
0.1389
p.R568Q
DO233888
GACA
ICGC
PDTST
DEG_SPOP_SBC_1
0.1111
p.P570L
DO11854
GBM
ICGC
PDTST
DEG_SPOP_SBC_1
0.1667
p.D577E
DO229019
LICA
ICGC
PDTST
DEG_SPOP_SBC_1
0.5647
p.L574P
DO224638
LUSC
ICGC
PDTST
DEG_SPOP_SBC_1
0.2778
p.A587P
SIDM00660
Colorectal Carcinoma
GDSC
PDTST
DEG_SPOP_SBC_1
0.1389
p.A587P
ACH-000985
Colon/Colorectal Cancer
CCLE
PDTST
DEG_SPOP_SBC_1
0.1389
p.A587P
LS-411N
large_intestine
COSMIC
PDTST
DEG_SPOP_SBC_1
0.1389
p.L589M
SIDM00057
Neuroblastoma
GDSC
PDTST
DEG_SPOP_SBC_1
0.0833
p.L589M
SIDM00552
Rhabdomyosarcoma
GDSC
PDTST
DEG_SPOP_SBC_1
0.0833
p.L589M
ACH-000607
Rhabdoid
CCLE
PDTST
DEG_SPOP_SBC_1
0.0833
p.L589M
KYM-1
soft_tissue
COSMIC
PDTST
DEG_SPOP_SBC_1
0.0833
p.V572M
SIDM00560
Gastric Carcinoma
GDSC
PDTST
DEG_SPOP_SBC_1
0.2222
p.V572M
MKN7
stomach
COSMIC
PDTST
DEG_SPOP_SBC_1
0.2222
p.E578K
MEL-HO
skin
COSMIC
PDTST
DEG_SPOP_SBC_1
0.7022
Drug responses associated with ROBO4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PDTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P46821
Microtubule-associated protein 1B
DEG_SPOP_SBC_1
2035:2039
PDTST
SPOP
0.9975
More...
P52756
RNA-binding protein 5
DEG_SPOP_SBC_1
457:461
PDTST
SPOP
0.9481
More...
Q7Z7G8
Intermembrane lipid transfer protein VPS13B
DEG_SPOP_SBC_1
1274:1278
PDTST
SPOP
0.8975
More...
Q8NDL9
Cytosolic carboxypeptidase-like protein 5
DEG_SPOP_SBC_1
229:233
PDTST
SPOP
0.8141
More...
Q8WZ75
Roundabout homolog 4
DEG_SPOP_SBC_1
576:580
PDTST
SPOP
0.9187
More...
Q92794
Histone acetyltransferase KAT6A
DEG_SPOP_SBC_1
1140:1144
PDTST
SPOP
0.9558
More...
Q92954
Proteoglycan 4
DEG_SPOP_SBC_1
236:240
PDTST
SPOP
0.9814
More...
Q96GD3
Polycomb protein SCMH1
DEG_SPOP_SBC_1
337:341
PDTST
SPOP
0.9895
More...
Q96LR2
Leucine rich adaptor protein 1
DEG_SPOP_SBC_1
131:135
PDTST
SPOP
0.9852
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SPOP_SBC_1
676:680
PDTST
SPOP
0.9536
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SPOP_SBC_1
801:805
PDTST
SPOP
0.9687
More...
Q9UFD9
RIMS-binding protein 3A
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.9775
More...
A6NJZ7
RIMS-binding protein 3C
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.5006
More...
A6NNM3
RIMS-binding protein 3B
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.5384
More...
Q8N9M1
Uncharacterized protein C19orf47
DEG_SPOP_SBC_1
160:164
PDTST
SPOP
0.9381
More...