DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PDTST
Uniprot ID:
Q96GD3
Source protein:
Polycomb protein SCMH1
Source gene:
SCMH1
Class:
DEG_SPOP_SBC_1
Location:
337:341
E3 ligase:
SPOP
DEGRON score:
0.9895
ASA_SCORE:
86.18
COIL:
0.896
CONS_SCORE:
0.5599
DSS_SCORE:
0.7439
HELIX:
0.0606
FCONS_SCORE:
1.3481
RIG_SCORE:
0.6192
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T341N
TCGA-EO-A22R
UCEC
TCGA
PDTST
DEG_SPOP_SBC_1
0.7055
p.T342N
DO228985
LICA
ICGC
PDTST
DEG_SPOP_SBC_1
0.3056
p.T351N
DO42713
UCEC
ICGC
PDTST
DEG_SPOP_SBC_1
0.0556
p.S343N
SNU-175
large_intestine
COSMIC
PDTST
DEG_SPOP_SBC_1
0.2778
p.R342H
5637
urinary_tract
COSMIC
PDTST
DEG_SPOP_SBC_1
0.3056
p.R343L
HeLa
cervix
COSMIC
PDTST
DEG_SPOP_SBC_1
0.2778
p.A336T
ECC12
stomach
COSMIC
PDTST
DEG_SPOP_SBC_1
0.3056
p.A329V
RKO
large_intestine
COSMIC
PDTST
DEG_SPOP_SBC_1
0.1111
p.R328H
5637
urinary_tract
COSMIC
PDTST
DEG_SPOP_SBC_1
0.0833
p.K328E
SW48
large_intestine
COSMIC
PDTST
DEG_SPOP_SBC_1
0.0833
p.A343V
RKO
large_intestine
COSMIC
PDTST
DEG_SPOP_SBC_1
0.2778
p.A350T
ECC12
stomach
COSMIC
PDTST
DEG_SPOP_SBC_1
0.0833
Drug responses associated with SCMH1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PDTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P46821
Microtubule-associated protein 1B
DEG_SPOP_SBC_1
2035:2039
PDTST
SPOP
0.9975
More...
P52756
RNA-binding protein 5
DEG_SPOP_SBC_1
457:461
PDTST
SPOP
0.9481
More...
Q7Z7G8
Intermembrane lipid transfer protein VPS13B
DEG_SPOP_SBC_1
1274:1278
PDTST
SPOP
0.8975
More...
Q8NDL9
Cytosolic carboxypeptidase-like protein 5
DEG_SPOP_SBC_1
229:233
PDTST
SPOP
0.8141
More...
Q8WZ75
Roundabout homolog 4
DEG_SPOP_SBC_1
576:580
PDTST
SPOP
0.9187
More...
Q92794
Histone acetyltransferase KAT6A
DEG_SPOP_SBC_1
1140:1144
PDTST
SPOP
0.9558
More...
Q92954
Proteoglycan 4
DEG_SPOP_SBC_1
236:240
PDTST
SPOP
0.9814
More...
Q96GD3
Polycomb protein SCMH1
DEG_SPOP_SBC_1
337:341
PDTST
SPOP
0.9895
More...
Q96LR2
Leucine rich adaptor protein 1
DEG_SPOP_SBC_1
131:135
PDTST
SPOP
0.9852
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SPOP_SBC_1
676:680
PDTST
SPOP
0.9536
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SPOP_SBC_1
801:805
PDTST
SPOP
0.9687
More...
Q9UFD9
RIMS-binding protein 3A
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.9775
More...
A6NJZ7
RIMS-binding protein 3C
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.5006
More...
A6NNM3
RIMS-binding protein 3B
DEG_SPOP_SBC_1
315:319
PDTST
SPOP
0.5384
More...
Q8N9M1
Uncharacterized protein C19orf47
DEG_SPOP_SBC_1
160:164
PDTST
SPOP
0.9381
More...