DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PETTT
Uniprot ID:
P13611
Source protein:
Versican core protein
Source gene:
VCAN
Class:
DEG_SPOP_SBC_1
Location:
1844:1848
E3 ligase:
SPOP
DEGRON score:
0.7668
ASA_SCORE:
91.68
COIL:
0.6816
CONS_SCORE:
0.541
DSS_SCORE:
0.5163
HELIX:
0.0158
FCONS_SCORE:
1.2025
RIG_SCORE:
0.7305
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V1856L
TCGA-50-5930
LUAD
TCGA
PETTT
DEG_SPOP_SBC_1
0.1111
p.V1856L
DO25189
LUAD
ICGC
PETTT
DEG_SPOP_SBC_1
0.1111
p.T1848S
TCGA-64-1679
LUAD
TCGA
PETTT
DEG_SPOP_SBC_1
0.6005
p.T1848S
DO26200
LUAD
ICGC
PETTT
DEG_SPOP_SBC_1
0.6005
p.D1843N
TCGA-AG-4015
READ
TCGA
PETTT
DEG_SPOP_SBC_1
0.3056
p.D1843N
DO233765
GACA
ICGC
PETTT
DEG_SPOP_SBC_1
0.3056
p.D1843N
DO36459
READ
ICGC
PETTT
DEG_SPOP_SBC_1
0.3056
p.V1849G
TCGA-BS-A0UJ
UCEC
TCGA
PETTT
DEG_SPOP_SBC_1
0.3056
p.V1849G
DO42745
UCEC
ICGC
PETTT
DEG_SPOP_SBC_1
0.3056
p.P1844S
TCGA-D3-A8GR
SKCM
TCGA
PETTT
DEG_SPOP_SBC_1
0.6752
p.P1844S
DO51247
SKCM
ICGC
PETTT
DEG_SPOP_SBC_1
0.6752
p.S1853L
DO220901
MELA
ICGC
PETTT
DEG_SPOP_SBC_1
0.1944
p.V1856I
DO51507
PACA
ICGC
PETTT
DEG_SPOP_SBC_1
0.1111
p.V1856I
SIDM00217
Colorectal Carcinoma
GDSC
PETTT
DEG_SPOP_SBC_1
0.1111
p.V1856I
SNU-1040
large_intestine
COSMIC
PETTT
DEG_SPOP_SBC_1
0.1111
p.L1854S
SIDM00602
Gastric Carcinoma
GDSC
PETTT
DEG_SPOP_SBC_1
0.1667
p.L1854S
ACH-000919
Gastric Cancer
CCLE
PETTT
DEG_SPOP_SBC_1
0.1667
p.L1854S
IM-95
stomach
COSMIC
PETTT
DEG_SPOP_SBC_1
0.1667
p.T1847N
SIDM00359
Colorectal Carcinoma
GDSC
PETTT
DEG_SPOP_SBC_1
0.7055
p.T1847N
ACH-000565
Colon/Colorectal Cancer
CCLE
PETTT
DEG_SPOP_SBC_1
0.7055
p.T1847N
RCM-1
large_intestine
COSMIC
PETTT
DEG_SPOP_SBC_1
0.7055
p.G1847D
SK-UT-1
soft_tissue
COSMIC
PETTT
DEG_SPOP_SBC_1
0.7198
Drug responses associated with VCAN mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PETTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O94817
Ubiquitin-like protein ATG12
DEG_SPOP_SBC_1
27:31
PETTT
SPOP
0.8998
More...
P07498
Kappa-casein
DEG_SPOP_SBC_1
170:174
PETTT
SPOP
0.991
More...
P13611
Versican core protein
DEG_SPOP_SBC_1
1844:1848
PETTT
SPOP
0.7668
More...
P57071
PR domain zinc finger protein 15
DEG_SPOP_SBC_1
1263:1267
PETTT
SPOP
0.74
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
984:988
PETTT
SPOP
0.91
More...
Q08379
Golgin subfamily A member 2
DEG_SPOP_SBC_1
56:60
PETTT
SPOP
0.8756
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
11177:11181
PETTT
SPOP
0.6393
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
11429:11433
PETTT
SPOP
0.8471
More...
Q92954
Proteoglycan 4
DEG_SPOP_SBC_1
928:932
PETTT
SPOP
0.9958
More...
Q9NYA3
Golgin subfamily A member 6A
DEG_SPOP_SBC_1
55:59
PETTT
SPOP
0.6277
More...
Q9UHW9
Solute carrier family 12 member 6
DEG_SPOP_SBC_1
4:8
PETTT
SPOP
0.9865
More...
Q8N9W4
Golgin subfamily A member 6-like protein 2
DEG_SPOP_SBC_1
58:62
PETTT
SPOP
0.9524
More...
A6NDN3
Golgin subfamily A member 6B
DEG_SPOP_SBC_1
55:59
PETTT
SPOP
0.9725
More...
Q9ULL0
Acrosomal protein KIAA1210
DEG_SPOP_SBC_1
602:606
PETTT
SPOP
0.8571
More...
Q63HN1
Putative protein FAM205B
DEG_SPOP_SBC_1
292:296
PETTT
SPOP
0.5845
More...
Q6ZU69
Protein FAM205A
DEG_SPOP_SBC_1
562:566
PETTT
SPOP
0.6816
More...