DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VLSTS
Uniprot ID:
P54132
Source protein:
Bloom syndrome protein
Source gene:
BLM
Class:
DEG_SPOP_SBC_1
Location:
334:338
E3 ligase:
SPOP
DEGRON score:
0.5966
ASA_SCORE:
70.46
COIL:
0.5804
CONS_SCORE:
0.1979
DSS_SCORE:
0.5516
HELIX:
0.3812
FCONS_SCORE:
0.946
RIG_SCORE:
0.7273
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D340Y
TCGA-AP-A0LM
UCEC
TCGA
VLSTS
DEG_SPOP_SBC_1
0.2778
p.D340Y
DO229257
THCA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.2778
p.D340Y
DO43306
UCEC
ICGC
VLSTS
DEG_SPOP_SBC_1
0.2778
p.V334I
TCGA-AX-A0J1
UCEC
TCGA
VLSTS
DEG_SPOP_SBC_1
0.7076
p.V334I
DO41199
UCEC
ICGC
VLSTS
DEG_SPOP_SBC_1
0.7076
p.L335F
TCGA-FR-A726
SKCM
TCGA
VLSTS
DEG_SPOP_SBC_1
0.587
p.L335F
DO48665
SKCM
ICGC
VLSTS
DEG_SPOP_SBC_1
0.587
p.M348I
TCGA-UC-A7PG
CESC
TCGA
VLSTS
DEG_SPOP_SBC_1
0.0556
p.M348I
DO51615
CESC
ICGC
VLSTS
DEG_SPOP_SBC_1
0.0556
p.M348I
DO229005
COCA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.0556
p.M348I
SIDM00588
Oral Cavity Carcinoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.0556
p.M348I
SIDM01447
Glioblastoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.0556
p.M348I
HSC-4
upper_aerodigestive_tract
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.0556
p.M348V
TCGA-Y8-A894
KIRP
TCGA
VLSTS
DEG_SPOP_SBC_1
0.0556
p.M348V
DO49798
KIRP
ICGC
VLSTS
DEG_SPOP_SBC_1
0.0556
p.S328C
TCGA-ZF-AA54
BLCA
TCGA
VLSTS
DEG_SPOP_SBC_1
0.6111
p.S328C
DO219098
BLCA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.6111
p.E346K
DO223035
ESCA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.1111
p.S336I
DO229036
LICA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.7341
p.V334F
DO229045
LICA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.7068
p.D329H
SIDM01016
T-Lymphoblastic Leukemia
GDSC
VLSTS
DEG_SPOP_SBC_1
0.1944
p.D329H
ACH-000995
Leukemia
CCLE
VLSTS
DEG_SPOP_SBC_1
0.1944
p.D329H
Jurkat
haematopoietic_and_lymphoid_tissue
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.1944
p.K347N
SIDM00118
Colorectal Carcinoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.1944
p.K347N
ACH-001081
Colon/Colorectal Cancer
CCLE
VLSTS
DEG_SPOP_SBC_1
0.1944
p.K347N
HCC2998
large_intestine
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with BLM mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P16144
Integrin beta-4
DEG_SPOP_SBC_1
1481:1485
VLSTS
SPOP
0.7831
More...
P54132
Bloom syndrome protein
DEG_SPOP_SBC_1
334:338
VLSTS
SPOP
0.5966
More...
Q32MK0
Myosin light chain kinase 3
DEG_SPOP_SBC_1
174:178
VLSTS
SPOP
0.9947
More...
Q6IPM2
IQ domain-containing protein E
DEG_SPOP_SBC_1
318:322
VLSTS
SPOP
0.5759
More...
Q6ZMZ0
E3 ubiquitin-protein ligase RNF19B
DEG_SPOP_SBC_1
492:496
VLSTS
SPOP
0.944
More...
Q7KZI7
Serine/threonine-protein kinase MARK2
DEG_SPOP_SBC_1
475:479
VLSTS
SPOP
0.9918
More...
Q7Z460
CLIP-associating protein 1
DEG_SPOP_SBC_1
793:797
VLSTS
SPOP
0.9931
More...
Q8TEJ3
E3 ubiquitin-protein ligase SH3RF3
DEG_SPOP_SBC_1
696:700
VLSTS
SPOP
0.9715
More...
Q92540
Nonsense-mediated mRNA decay factor SMG7
DEG_SPOP_SBC_1
526:530
VLSTS
SPOP
0.9999
More...
Q96LA8
Protein arginine N-methyltransferase 6
DEG_SPOP_SBC_1
306:310
VLSTS
SPOP
0.5624
More...
Q9H0E7
Ubiquitin carboxyl-terminal hydrolase 44
DEG_SPOP_SBC_1
245:249
VLSTS
SPOP
0.9886
More...
Q9P275
Ubiquitin carboxyl-terminal hydrolase 36
DEG_SPOP_SBC_1
578:582
VLSTS
SPOP
0.9967
More...
Q9UNZ2
NSFL1 cofactor p47
DEG_SPOP_SBC_1
267:271
VLSTS
SPOP
0.7502
More...
Q5T8P6
RNA-binding protein 26
DEG_SPOP_SBC_1
687:691
VLSTS
SPOP
0.5563
More...