DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VLSTS
Uniprot ID:
Q9P275
Source protein:
Ubiquitin carboxyl-terminal hydrolase 36
Source gene:
USP36
Class:
DEG_SPOP_SBC_1
Location:
578:582
E3 ligase:
SPOP
DEGRON score:
0.9967
ASA_SCORE:
72.14
COIL:
0.8874
CONS_SCORE:
0.2763
DSS_SCORE:
0.5007
HELIX:
0.0504
FCONS_SCORE:
0.9029
RIG_SCORE:
0.7577
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L579I
TCGA-BR-8361
STAD
TCGA
VLSTS
DEG_SPOP_SBC_1
0.6063
p.R572Q
DO3686
BRCA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.1667
p.R572Q
DO232224
PBCA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.1667
p.P583Q
DO20853
KIRP
ICGC
VLSTS
DEG_SPOP_SBC_1
0.3056
p.D590N
DO231819
LINC
ICGC
VLSTS
DEG_SPOP_SBC_1
0.1111
p.V574A
DO229257
THCA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.2222
p.D590Y
DO41871
UCEC
ICGC
VLSTS
DEG_SPOP_SBC_1
0.1111
p.L585I
ACH-002287
Colon/Colorectal Cancer
CCLE
VLSTS
DEG_SPOP_SBC_1
0.25
p.L585I
NCI-H630
large_intestine
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.25
Drug responses associated with USP36 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P16144
Integrin beta-4
DEG_SPOP_SBC_1
1481:1485
VLSTS
SPOP
0.7831
More...
P54132
Bloom syndrome protein
DEG_SPOP_SBC_1
334:338
VLSTS
SPOP
0.5966
More...
Q32MK0
Myosin light chain kinase 3
DEG_SPOP_SBC_1
174:178
VLSTS
SPOP
0.9947
More...
Q6IPM2
IQ domain-containing protein E
DEG_SPOP_SBC_1
318:322
VLSTS
SPOP
0.5759
More...
Q6ZMZ0
E3 ubiquitin-protein ligase RNF19B
DEG_SPOP_SBC_1
492:496
VLSTS
SPOP
0.944
More...
Q7KZI7
Serine/threonine-protein kinase MARK2
DEG_SPOP_SBC_1
475:479
VLSTS
SPOP
0.9918
More...
Q7Z460
CLIP-associating protein 1
DEG_SPOP_SBC_1
793:797
VLSTS
SPOP
0.9931
More...
Q8TEJ3
E3 ubiquitin-protein ligase SH3RF3
DEG_SPOP_SBC_1
696:700
VLSTS
SPOP
0.9715
More...
Q92540
Nonsense-mediated mRNA decay factor SMG7
DEG_SPOP_SBC_1
526:530
VLSTS
SPOP
0.9999
More...
Q96LA8
Protein arginine N-methyltransferase 6
DEG_SPOP_SBC_1
306:310
VLSTS
SPOP
0.5624
More...
Q9H0E7
Ubiquitin carboxyl-terminal hydrolase 44
DEG_SPOP_SBC_1
245:249
VLSTS
SPOP
0.9886
More...
Q9P275
Ubiquitin carboxyl-terminal hydrolase 36
DEG_SPOP_SBC_1
578:582
VLSTS
SPOP
0.9967
More...
Q9UNZ2
NSFL1 cofactor p47
DEG_SPOP_SBC_1
267:271
VLSTS
SPOP
0.7502
More...
Q5T8P6
RNA-binding protein 26
DEG_SPOP_SBC_1
687:691
VLSTS
SPOP
0.5563
More...