DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VLSTS
Uniprot ID:
Q8TEJ3
Source protein:
E3 ubiquitin-protein ligase SH3RF3
Source gene:
SH3RF3
Class:
DEG_SPOP_SBC_1
Location:
696:700
E3 ligase:
SPOP
DEGRON score:
0.9715
ASA_SCORE:
80.3
COIL:
0.8804
CONS_SCORE:
0.339
DSS_SCORE:
0.5441
HELIX:
0.0336
FCONS_SCORE:
1.065
RIG_SCORE:
0.6621
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.C707Y
TCGA-29-1702
OV
TCGA
VLSTS
DEG_SPOP_SBC_1
0.1389
p.C707Y
DO29528
OV
ICGC
VLSTS
DEG_SPOP_SBC_1
0.1389
p.N704T
TCGA-2H-A9GO
ESCA
TCGA
VLSTS
DEG_SPOP_SBC_1
0.2222
p.D710E
TCGA-AD-6895
COAD
TCGA
VLSTS
DEG_SPOP_SBC_1
0.0556
p.D710E
DO8938
COAD
ICGC
VLSTS
DEG_SPOP_SBC_1
0.0556
p.A689P
TCGA-CA-6717
COAD
TCGA
VLSTS
DEG_SPOP_SBC_1
0.1389
p.A689P
DO8264
COAD
ICGC
VLSTS
DEG_SPOP_SBC_1
0.1389
p.N704S
TCGA-EO-A3B0
UCEC
TCGA
VLSTS
DEG_SPOP_SBC_1
0.2222
p.N704S
DO219773
UCEC
ICGC
VLSTS
DEG_SPOP_SBC_1
0.2222
p.L697P
DO225106
BRCA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.6471
p.S698A
DO225106
BRCA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.7588
p.I694V
DO233168
GACA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.2778
p.G695C
DO229015
LICA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.3056
p.S701I
DO229024
LICA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.3056
p.S698F
DO228011
SKCA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.S700F
SIDM00985
Burkitt's Lymphoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.S700F
SIDM01109
Other Sarcomas
GDSC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.S700F
SIDM01248
Thyroid Gland Carcinoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.S700F
SIDM00190
Melanoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.S700F
SIDM00091
Ovarian Carcinoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.S700F
SIDM00710
Small Cell Lung Carcinoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.S700F
SIDM00943
Pancreatic Carcinoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.S700F
SIDM01715
Non-Cancerous
GDSC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.S700F
SIDM00137
Non-Small Cell Lung Carcinoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.S700F
SIDM01323
Oral Cavity Carcinoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.S700F
SIDM01765
Osteosarcoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.S700F
SIDM01167
Thyroid Gland Carcinoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.7982
p.G706V
SIDM00703
Non-Small Cell Lung Carcinoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.1667
p.G706V
SIDM00793
Burkitt's Lymphoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.1667
p.T705M
SIDM01322
Oral Cavity Carcinoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.1944
p.P693S
ACH-001853
Bile Duct Cancer
CCLE
VLSTS
DEG_SPOP_SBC_1
0.25
Drug responses associated with SH3RF3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P16144
Integrin beta-4
DEG_SPOP_SBC_1
1481:1485
VLSTS
SPOP
0.7831
More...
P54132
Bloom syndrome protein
DEG_SPOP_SBC_1
334:338
VLSTS
SPOP
0.5966
More...
Q32MK0
Myosin light chain kinase 3
DEG_SPOP_SBC_1
174:178
VLSTS
SPOP
0.9947
More...
Q6IPM2
IQ domain-containing protein E
DEG_SPOP_SBC_1
318:322
VLSTS
SPOP
0.5759
More...
Q6ZMZ0
E3 ubiquitin-protein ligase RNF19B
DEG_SPOP_SBC_1
492:496
VLSTS
SPOP
0.944
More...
Q7KZI7
Serine/threonine-protein kinase MARK2
DEG_SPOP_SBC_1
475:479
VLSTS
SPOP
0.9918
More...
Q7Z460
CLIP-associating protein 1
DEG_SPOP_SBC_1
793:797
VLSTS
SPOP
0.9931
More...
Q8TEJ3
E3 ubiquitin-protein ligase SH3RF3
DEG_SPOP_SBC_1
696:700
VLSTS
SPOP
0.9715
More...
Q92540
Nonsense-mediated mRNA decay factor SMG7
DEG_SPOP_SBC_1
526:530
VLSTS
SPOP
0.9999
More...
Q96LA8
Protein arginine N-methyltransferase 6
DEG_SPOP_SBC_1
306:310
VLSTS
SPOP
0.5624
More...
Q9H0E7
Ubiquitin carboxyl-terminal hydrolase 44
DEG_SPOP_SBC_1
245:249
VLSTS
SPOP
0.9886
More...
Q9P275
Ubiquitin carboxyl-terminal hydrolase 36
DEG_SPOP_SBC_1
578:582
VLSTS
SPOP
0.9967
More...
Q9UNZ2
NSFL1 cofactor p47
DEG_SPOP_SBC_1
267:271
VLSTS
SPOP
0.7502
More...
Q5T8P6
RNA-binding protein 26
DEG_SPOP_SBC_1
687:691
VLSTS
SPOP
0.5563
More...