DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VLSTS
Uniprot ID:
Q9UNZ2
Source protein:
NSFL1 cofactor p47
Source gene:
NSFL1C
Class:
DEG_SPOP_SBC_1
Location:
267:271
E3 ligase:
SPOP
DEGRON score:
0.7502
ASA_SCORE:
64.02
COIL:
0.655
CONS_SCORE:
0.2294
DSS_SCORE:
0.6111
HELIX:
0.1348
FCONS_SCORE:
0.3802
RIG_SCORE:
0.6907
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A279V
TCGA-AX-A3G8
UCEC
TCGA
VLSTS
DEG_SPOP_SBC_1
0.1111
p.A266D
TCGA-EO-A22U
UCEC
TCGA
VLSTS
DEG_SPOP_SBC_1
0.3056
p.S273R
TCGA-X6-A7WA
SARC
TCGA
VLSTS
DEG_SPOP_SBC_1
0.2778
p.R257L
DO37480
SKCM
ICGC
VLSTS
DEG_SPOP_SBC_1
0.0556
p.R257L
DO37443
SKCM
ICGC
VLSTS
DEG_SPOP_SBC_1
0.0556
p.L270F
SIDM00664
Pancreatic Carcinoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.6981
p.L270F
Hs766T
pancreas
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.6981
p.S273I
SIDM01100
Neuroblastoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.2778
p.S273I
SK-N-DZ
autonomic_ganglia
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.2778
p.L268F
ACH-000178
Pancreatic Cancer
CCLE
VLSTS
DEG_SPOP_SBC_1
0.587
p.L268F
Hs766T
pancreas
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.587
p.S271I
ACH-000366
Neuroblastoma
CCLE
VLSTS
DEG_SPOP_SBC_1
0.7341
p.S271I
SK-N-DZ
autonomic_ganglia
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.7341
p.G274R
SW1271
lung
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.25
p.T264I
HCT-15
large_intestine
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.25
p.T264A
GP5d
large_intestine
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.25
p.I269S
HCC2998
large_intestine
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.7341
Drug responses associated with NSFL1C mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P16144
Integrin beta-4
DEG_SPOP_SBC_1
1481:1485
VLSTS
SPOP
0.7831
More...
P54132
Bloom syndrome protein
DEG_SPOP_SBC_1
334:338
VLSTS
SPOP
0.5966
More...
Q32MK0
Myosin light chain kinase 3
DEG_SPOP_SBC_1
174:178
VLSTS
SPOP
0.9947
More...
Q6IPM2
IQ domain-containing protein E
DEG_SPOP_SBC_1
318:322
VLSTS
SPOP
0.5759
More...
Q6ZMZ0
E3 ubiquitin-protein ligase RNF19B
DEG_SPOP_SBC_1
492:496
VLSTS
SPOP
0.944
More...
Q7KZI7
Serine/threonine-protein kinase MARK2
DEG_SPOP_SBC_1
475:479
VLSTS
SPOP
0.9918
More...
Q7Z460
CLIP-associating protein 1
DEG_SPOP_SBC_1
793:797
VLSTS
SPOP
0.9931
More...
Q8TEJ3
E3 ubiquitin-protein ligase SH3RF3
DEG_SPOP_SBC_1
696:700
VLSTS
SPOP
0.9715
More...
Q92540
Nonsense-mediated mRNA decay factor SMG7
DEG_SPOP_SBC_1
526:530
VLSTS
SPOP
0.9999
More...
Q96LA8
Protein arginine N-methyltransferase 6
DEG_SPOP_SBC_1
306:310
VLSTS
SPOP
0.5624
More...
Q9H0E7
Ubiquitin carboxyl-terminal hydrolase 44
DEG_SPOP_SBC_1
245:249
VLSTS
SPOP
0.9886
More...
Q9P275
Ubiquitin carboxyl-terminal hydrolase 36
DEG_SPOP_SBC_1
578:582
VLSTS
SPOP
0.9967
More...
Q9UNZ2
NSFL1 cofactor p47
DEG_SPOP_SBC_1
267:271
VLSTS
SPOP
0.7502
More...
Q5T8P6
RNA-binding protein 26
DEG_SPOP_SBC_1
687:691
VLSTS
SPOP
0.5563
More...