DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VLSTS
Uniprot ID:
Q96LA8
Source protein:
Protein arginine N-methyltransferase 6
Source gene:
PRMT6
Class:
DEG_SPOP_SBC_1
Location:
306:310
E3 ligase:
SPOP
DEGRON score:
0.5624
ASA_SCORE:
23.4
COIL:
0.4472
CONS_SCORE:
0.7473
DSS_SCORE:
0.41
HELIX:
0.0116
FCONS_SCORE:
1.3535
RIG_SCORE:
0.7333
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S310L
TCGA-60-2720
LUSC
TCGA
VLSTS
DEG_SPOP_SBC_1
0.7667
p.S310L
DO26587
LUSC
ICGC
VLSTS
DEG_SPOP_SBC_1
0.7667
p.P314S
TCGA-AR-A0U2
BRCA
TCGA
VLSTS
DEG_SPOP_SBC_1
0.2222
p.P314S
DO5067
BRCA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.2222
p.G299V
TCGA-ER-A195
SKCM
TCGA
VLSTS
DEG_SPOP_SBC_1
0.1389
p.G299V
DO47712
SKCM
ICGC
VLSTS
DEG_SPOP_SBC_1
0.1389
p.G298R
TCGA-QC-A7B5
SARC
TCGA
VLSTS
DEG_SPOP_SBC_1
0.1111
p.G298R
DO220239
SARC
ICGC
VLSTS
DEG_SPOP_SBC_1
0.1111
p.Q320R
DO233109
GACA
ICGC
VLSTS
DEG_SPOP_SBC_1
0.0556
p.T309P
DO46366
OV
ICGC
VLSTS
DEG_SPOP_SBC_1
0.7031
p.A315V
SIDM00001
Other Blood Cancers
GDSC
VLSTS
DEG_SPOP_SBC_1
0.1944
p.A315V
ACH-000405
Leukemia
CCLE
VLSTS
DEG_SPOP_SBC_1
0.1944
p.F296L
SIDM00313
Hodgkin's Lymphoma
GDSC
VLSTS
DEG_SPOP_SBC_1
0.0556
p.F296L
ACH-000702
Lymphoma
CCLE
VLSTS
DEG_SPOP_SBC_1
0.0556
p.F296L
L-1236
haematopoietic_and_lymphoid_tissue
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.0556
p.E302V
SIDM00958
Chronic Myelogenous Leukemia
GDSC
VLSTS
DEG_SPOP_SBC_1
0.2222
p.E302V
ACH-000920
Leukemia
CCLE
VLSTS
DEG_SPOP_SBC_1
0.2222
p.E302V
CML-T1
haematopoietic_and_lymphoid_tissue
COSMIC
VLSTS
DEG_SPOP_SBC_1
0.2222
Drug responses associated with PRMT6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P16144
Integrin beta-4
DEG_SPOP_SBC_1
1481:1485
VLSTS
SPOP
0.7831
More...
P54132
Bloom syndrome protein
DEG_SPOP_SBC_1
334:338
VLSTS
SPOP
0.5966
More...
Q32MK0
Myosin light chain kinase 3
DEG_SPOP_SBC_1
174:178
VLSTS
SPOP
0.9947
More...
Q6IPM2
IQ domain-containing protein E
DEG_SPOP_SBC_1
318:322
VLSTS
SPOP
0.5759
More...
Q6ZMZ0
E3 ubiquitin-protein ligase RNF19B
DEG_SPOP_SBC_1
492:496
VLSTS
SPOP
0.944
More...
Q7KZI7
Serine/threonine-protein kinase MARK2
DEG_SPOP_SBC_1
475:479
VLSTS
SPOP
0.9918
More...
Q7Z460
CLIP-associating protein 1
DEG_SPOP_SBC_1
793:797
VLSTS
SPOP
0.9931
More...
Q8TEJ3
E3 ubiquitin-protein ligase SH3RF3
DEG_SPOP_SBC_1
696:700
VLSTS
SPOP
0.9715
More...
Q92540
Nonsense-mediated mRNA decay factor SMG7
DEG_SPOP_SBC_1
526:530
VLSTS
SPOP
0.9999
More...
Q96LA8
Protein arginine N-methyltransferase 6
DEG_SPOP_SBC_1
306:310
VLSTS
SPOP
0.5624
More...
Q9H0E7
Ubiquitin carboxyl-terminal hydrolase 44
DEG_SPOP_SBC_1
245:249
VLSTS
SPOP
0.9886
More...
Q9P275
Ubiquitin carboxyl-terminal hydrolase 36
DEG_SPOP_SBC_1
578:582
VLSTS
SPOP
0.9967
More...
Q9UNZ2
NSFL1 cofactor p47
DEG_SPOP_SBC_1
267:271
VLSTS
SPOP
0.7502
More...
Q5T8P6
RNA-binding protein 26
DEG_SPOP_SBC_1
687:691
VLSTS
SPOP
0.5563
More...