DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
ATTTT
Uniprot ID:
P58401
Source protein:
Neurexin-2-beta
Source gene:
NRXN2
Class:
DEG_SPOP_SBC_1
Location:
327:331
E3 ligase:
SPOP
DEGRON score:
0.9847
ASA_SCORE:
90.94
COIL:
0.9114
CONS_SCORE:
0.5974
DSS_SCORE:
0.6657
HELIX:
0.029
FCONS_SCORE:
1.1591
RIG_SCORE:
0.7861
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K332N
TCGA-33-4586
LUSC
TCGA
ATTTT
DEG_SPOP_SBC_1
0.3056
p.N324K
TCGA-60-2714
LUSC
TCGA
ATTTT
DEG_SPOP_SBC_1
0.25
p.R323H
TCGA-AJ-A3OJ
UCEC
TCGA
ATTTT
DEG_SPOP_SBC_1
0.2222
p.R323H
TCGA-AP-A0LM
UCEC
TCGA
ATTTT
DEG_SPOP_SBC_1
0.2222
p.N338D
TCGA-B5-A3FA
UCEC
TCGA
ATTTT
DEG_SPOP_SBC_1
0.1389
p.R319C
TCGA-BR-8591
STAD
TCGA
ATTTT
DEG_SPOP_SBC_1
0.1111
p.A334T
TCGA-L5-A4OI
ESCA
TCGA
ATTTT
DEG_SPOP_SBC_1
0.25
p.A335V
DO8634
COAD
ICGC
ATTTT
DEG_SPOP_SBC_1
0.2222
p.S330P
DO230311
COCA
ICGC
ATTTT
DEG_SPOP_SBC_1
0.6752
p.L336H
DO229053
LICA
ICGC
ATTTT
DEG_SPOP_SBC_1
0.1944
p.A332V
DO232761
PBCA
ICGC
ATTTT
DEG_SPOP_SBC_1
0.3056
p.L336F
DO50301
SKCM
ICGC
ATTTT
DEG_SPOP_SBC_1
0.1944
p.A335T
DO47849
STAD
ICGC
ATTTT
DEG_SPOP_SBC_1
0.2222
p.R323C
SIDM01943
Colorectal Carcinoma
GDSC
ATTTT
DEG_SPOP_SBC_1
0.2222
p.D335N
SIDM01044
Other Solid Cancers
GDSC
ATTTT
DEG_SPOP_SBC_1
0.2222
p.D335N
ACH-000585
Lung Cancer
CCLE
ATTTT
DEG_SPOP_SBC_1
0.2222
p.D335N
EPLC-272H
lung
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.2222
p.N338T
SIDM00878
Breast Carcinoma
GDSC
ATTTT
DEG_SPOP_SBC_1
0.1389
p.N338T
ACH-000930
Breast Cancer
CCLE
ATTTT
DEG_SPOP_SBC_1
0.1389
p.N338T
HCC1569
breast
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.1389
p.H329N
SIDM01124
Non-Small Cell Lung Carcinoma
GDSC
ATTTT
DEG_SPOP_SBC_1
0.7423
p.H329N
ACH-000945
Lung Cancer
CCLE
ATTTT
DEG_SPOP_SBC_1
0.7423
p.H329N
NCI-H650
lung
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.7423
p.R323L
SIDM00727
Non-Small Cell Lung Carcinoma
GDSC
ATTTT
DEG_SPOP_SBC_1
0.2222
p.R323L
ACH-000951
Lung Cancer
CCLE
ATTTT
DEG_SPOP_SBC_1
0.2222
p.R323L
NCI-H2342
lung
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.2222
p.D335H
ACH-001386
Lung Cancer
CCLE
ATTTT
DEG_SPOP_SBC_1
0.2222
p.S336C
BT-474
breast
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.1944
Drug responses associated with NRXN2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of ATTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75179
Ankyrin repeat domain-containing protein 17
DEG_SPOP_SBC_1
1536:1540
ATTTT
SPOP
0.9967
More...
O94856
Neurofascin
DEG_SPOP_SBC_1
1079:1083
ATTTT
SPOP
0.901
More...
O95500
Claudin-14
DEG_SPOP_SBC_1
200:204
ATTTT
SPOP
0.8725
More...
P05067
Amyloid-beta precursor protein
DEG_SPOP_SBC_1
273:277
ATTTT
SPOP
0.8121
More...
P16989
Y-box-binding protein 3
DEG_SPOP_SBC_1
7:11
ATTTT
SPOP
0.9812
More...
P42566
Epidermal growth factor receptor substrate 15
DEG_SPOP_SBC_1
830:834
ATTTT
SPOP
0.9992
More...
P54727
UV excision repair protein RAD23 homolog B
DEG_SPOP_SBC_1
264:268
ATTTT
SPOP
0.979
More...
P57071
PR domain zinc finger protein 15
DEG_SPOP_SBC_1
689:693
ATTTT
SPOP
0.8785
More...
P58401
Neurexin-2-beta
DEG_SPOP_SBC_1
327:331
ATTTT
SPOP
0.9847
More...
Q16665
Hypoxia-inducible factor 1-alpha
DEG_SPOP_SBC_1
614:618
ATTTT
SPOP
0.9958
More...
Q6ZVD8
PH domain leucine-rich repeat-containing protein phosphatase 2
DEG_SPOP_SBC_1
43:47
ATTTT
SPOP
0.8865
More...
Q8IWZ3
Ankyrin repeat and KH domain-containing protein 1
DEG_SPOP_SBC_1
1509:1513
ATTTT
SPOP
0.9091
More...
Q9BVL2
Nucleoporin p58/p45
DEG_SPOP_SBC_1
160:164
ATTTT
SPOP
0.51
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
1619:1623
ATTTT
SPOP
0.9887
More...
Q9HDB5
Neurexin-3-beta
DEG_SPOP_SBC_1
289:293
ATTTT
SPOP
0.986
More...
Q9NXI6
E3 ubiquitin-protein ligase RNF186
DEG_SPOP_SBC_1
17:21
ATTTT
SPOP
0.7472
More...
Q9P2S2
Neurexin-2
DEG_SPOP_SBC_1
1373:1377
ATTTT
SPOP
0.9995
More...
Q9Y4C0
Neurexin-3
DEG_SPOP_SBC_1
1294:1298
ATTTT
SPOP
0.9994
More...
Q2M2H8
Probable maltase-glucoamylase 2
DEG_SPOP_SBC_1
2393:2397
ATTTT
SPOP
0.9763
More...
Q9H347
Ubiquilin-3
DEG_SPOP_SBC_1
286:290
ATTTT
SPOP
0.9975
More...