DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
ATTTT
Uniprot ID:
Q9HDB5
Source protein:
Neurexin-3-beta
Source gene:
NRXN3
Class:
DEG_SPOP_SBC_1
Location:
289:293
E3 ligase:
SPOP
DEGRON score:
0.986
ASA_SCORE:
89.06
COIL:
0.9336
CONS_SCORE:
0.4311
DSS_SCORE:
0.6063
HELIX:
0.0382
FCONS_SCORE:
1.0087
RIG_SCORE:
0.783
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G303R
TCGA-32-2632
GBM
TCGA
ATTTT
DEG_SPOP_SBC_1
0.0556
p.G303R
DO12250
GBM
ICGC
ATTTT
DEG_SPOP_SBC_1
0.0556
p.G288V
TCGA-43-8115
LUSC
TCGA
ATTTT
DEG_SPOP_SBC_1
0.3056
p.G288V
DO26440
LUSC
ICGC
ATTTT
DEG_SPOP_SBC_1
0.3056
p.W289L
TCGA-6A-AB49
LUSC
TCGA
ATTTT
DEG_SPOP_SBC_1
0.7015
p.W289L
DO52020
LUSC
ICGC
ATTTT
DEG_SPOP_SBC_1
0.7015
p.V284E
TCGA-86-8073
LUAD
TCGA
ATTTT
DEG_SPOP_SBC_1
0.1944
p.V284E
DO23624
LUAD
ICGC
ATTTT
DEG_SPOP_SBC_1
0.1944
p.N281D
TCGA-B5-A3FA
UCEC
TCGA
ATTTT
DEG_SPOP_SBC_1
0.1111
p.N281D
DO52402
UCEC
ICGC
ATTTT
DEG_SPOP_SBC_1
0.1111
p.R286Q
DO230326
COCA
ICGC
ATTTT
DEG_SPOP_SBC_1
0.25
p.R286Q
DO41644
UCEC
ICGC
ATTTT
DEG_SPOP_SBC_1
0.25
p.R286Q
DO41638
UCEC
ICGC
ATTTT
DEG_SPOP_SBC_1
0.25
p.R286Q
DO41458
UCEC
ICGC
ATTTT
DEG_SPOP_SBC_1
0.25
p.R286W
DO222884
COCA
ICGC
ATTTT
DEG_SPOP_SBC_1
0.25
p.R286W
DO233277
GACA
ICGC
ATTTT
DEG_SPOP_SBC_1
0.25
p.R286W
DO222662
MELA
ICGC
ATTTT
DEG_SPOP_SBC_1
0.25
p.R286W
DO41020
UCEC
ICGC
ATTTT
DEG_SPOP_SBC_1
0.25
p.T298A
DO234205
ESAD
ICGC
ATTTT
DEG_SPOP_SBC_1
0.1944
p.G298S
DO234173
ESAD
ICGC
ATTTT
DEG_SPOP_SBC_1
0.1944
p.L287M
DO14198
HNSC
ICGC
ATTTT
DEG_SPOP_SBC_1
0.2778
p.G288C
DO229032
LICA
ICGC
ATTTT
DEG_SPOP_SBC_1
0.3056
p.G288C
DO46591
OV
ICGC
ATTTT
DEG_SPOP_SBC_1
0.3056
p.V288F
DO229045
LICA
ICGC
ATTTT
DEG_SPOP_SBC_1
0.3056
p.R291H
DO34288
PACA
ICGC
ATTTT
DEG_SPOP_SBC_1
0.8244
p.G294S
SIDM00057
Neuroblastoma
GDSC
ATTTT
DEG_SPOP_SBC_1
0.3056
p.G294S
ACN
autonomic_ganglia
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.3056
p.R292C
SIDM00251
Gastric Carcinoma
GDSC
ATTTT
DEG_SPOP_SBC_1
0.8301
p.R292C
TGBC11TKB
stomach
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.8301
p.D281E
SIDM00290
Gastric Carcinoma
GDSC
ATTTT
DEG_SPOP_SBC_1
0.1111
p.D281E
HGC-27
stomach
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.1111
p.G288S
ACH-000997
Colon/Colorectal Cancer
CCLE
ATTTT
DEG_SPOP_SBC_1
0.3056
p.G288S
ACH-001061
Colon/Colorectal Cancer
CCLE
ATTTT
DEG_SPOP_SBC_1
0.3056
p.G288S
HCT-15
large_intestine
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.3056
p.M284I
LCLC-103H
lung
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.1944
p.T300M
HCC2998
large_intestine
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.1389
p.G292S
ACN
autonomic_ganglia
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.6993
p.R290C
TGBC11TKB
stomach
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.8301
p.D279E
HGC-27
stomach
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.0556
p.T298S
CW-2
large_intestine
COSMIC
ATTTT
DEG_SPOP_SBC_1
0.1944
Drug responses associated with NRXN3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of ATTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75179
Ankyrin repeat domain-containing protein 17
DEG_SPOP_SBC_1
1536:1540
ATTTT
SPOP
0.9967
More...
O94856
Neurofascin
DEG_SPOP_SBC_1
1079:1083
ATTTT
SPOP
0.901
More...
O95500
Claudin-14
DEG_SPOP_SBC_1
200:204
ATTTT
SPOP
0.8725
More...
P05067
Amyloid-beta precursor protein
DEG_SPOP_SBC_1
273:277
ATTTT
SPOP
0.8121
More...
P16989
Y-box-binding protein 3
DEG_SPOP_SBC_1
7:11
ATTTT
SPOP
0.9812
More...
P42566
Epidermal growth factor receptor substrate 15
DEG_SPOP_SBC_1
830:834
ATTTT
SPOP
0.9992
More...
P54727
UV excision repair protein RAD23 homolog B
DEG_SPOP_SBC_1
264:268
ATTTT
SPOP
0.979
More...
P57071
PR domain zinc finger protein 15
DEG_SPOP_SBC_1
689:693
ATTTT
SPOP
0.8785
More...
P58401
Neurexin-2-beta
DEG_SPOP_SBC_1
327:331
ATTTT
SPOP
0.9847
More...
Q16665
Hypoxia-inducible factor 1-alpha
DEG_SPOP_SBC_1
614:618
ATTTT
SPOP
0.9958
More...
Q6ZVD8
PH domain leucine-rich repeat-containing protein phosphatase 2
DEG_SPOP_SBC_1
43:47
ATTTT
SPOP
0.8865
More...
Q8IWZ3
Ankyrin repeat and KH domain-containing protein 1
DEG_SPOP_SBC_1
1509:1513
ATTTT
SPOP
0.9091
More...
Q9BVL2
Nucleoporin p58/p45
DEG_SPOP_SBC_1
160:164
ATTTT
SPOP
0.51
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
1619:1623
ATTTT
SPOP
0.9887
More...
Q9HDB5
Neurexin-3-beta
DEG_SPOP_SBC_1
289:293
ATTTT
SPOP
0.986
More...
Q9NXI6
E3 ubiquitin-protein ligase RNF186
DEG_SPOP_SBC_1
17:21
ATTTT
SPOP
0.7472
More...
Q9P2S2
Neurexin-2
DEG_SPOP_SBC_1
1373:1377
ATTTT
SPOP
0.9995
More...
Q9Y4C0
Neurexin-3
DEG_SPOP_SBC_1
1294:1298
ATTTT
SPOP
0.9994
More...
Q2M2H8
Probable maltase-glucoamylase 2
DEG_SPOP_SBC_1
2393:2397
ATTTT
SPOP
0.9763
More...
Q9H347
Ubiquilin-3
DEG_SPOP_SBC_1
286:290
ATTTT
SPOP
0.9975
More...