DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
PHSSS
Uniprot ID:
O94933
Source protein:
SLIT and NTRK-like protein 3
Source gene:
SLITRK3
Class:
DEG_SPOP_SBC_1
Location:
296:300
E3 ligase:
SPOP
DEGRON score:
0.8737
ASA_SCORE:
51.22
COIL:
0.8372
CONS_SCORE:
0.4161
DSS_SCORE:
0.4849
HELIX:
0.0894
FCONS_SCORE:
0.7945
RIG_SCORE:
0.6165
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A291P
TCGA-05-4427
LUAD
TCGA
PHSSS
DEG_SPOP_SBC_1
0.1944
p.A291P
DO23666
LUAD
ICGC
PHSSS
DEG_SPOP_SBC_1
0.1944
p.P310S
TCGA-3R-A8YX
SARC
TCGA
PHSSS
DEG_SPOP_SBC_1
0.0556
p.P310S
DO219943
SARC
ICGC
PHSSS
DEG_SPOP_SBC_1
0.0556
p.S299T
TCGA-78-7161
LUAD
TCGA
PHSSS
DEG_SPOP_SBC_1
0.6005
p.S299T
DO25975
LUAD
ICGC
PHSSS
DEG_SPOP_SBC_1
0.6005
p.E303D
TCGA-A5-A0G2
UCEC
TCGA
PHSSS
DEG_SPOP_SBC_1
0.25
p.E303D
DO41235
UCEC
ICGC
PHSSS
DEG_SPOP_SBC_1
0.25
p.S298L
TCGA-AA-A00N
COAD
TCGA
PHSSS
DEG_SPOP_SBC_1
0.7667
p.S298L
TCGA-AA-A010
COAD
TCGA
PHSSS
DEG_SPOP_SBC_1
0.7667
p.S298L
TCGA-D3-A8GB
SKCM
TCGA
PHSSS
DEG_SPOP_SBC_1
0.7667
p.S298L
TCGA-EE-A29M
SKCM
TCGA
PHSSS
DEG_SPOP_SBC_1
0.7667
p.S298L
DO9876
COAD
ICGC
PHSSS
DEG_SPOP_SBC_1
0.7667
p.S298L
DO222762
COCA
ICGC
PHSSS
DEG_SPOP_SBC_1
0.7667
p.S298L
DO222837
MELA
ICGC
PHSSS
DEG_SPOP_SBC_1
0.7667
p.S298L
DO37404
SKCM
ICGC
PHSSS
DEG_SPOP_SBC_1
0.7667
p.S298L
DO50280
SKCM
ICGC
PHSSS
DEG_SPOP_SBC_1
0.7667
p.I295F
TCGA-DA-A1HV
SKCM
TCGA
PHSSS
DEG_SPOP_SBC_1
0.3056
p.I295F
DO37659
SKCM
ICGC
PHSSS
DEG_SPOP_SBC_1
0.3056
p.G294E
TCGA-DA-A1HV
SKCM
TCGA
PHSSS
DEG_SPOP_SBC_1
0.2778
p.G294E
DO37659
SKCM
ICGC
PHSSS
DEG_SPOP_SBC_1
0.2778
p.S287F
TCGA-EE-A2GD
SKCM
TCGA
PHSSS
DEG_SPOP_SBC_1
0.0833
p.S287F
DO37603
SKCM
ICGC
PHSSS
DEG_SPOP_SBC_1
0.0833
p.S287F
SIDM01060
Melanoma
GDSC
PHSSS
DEG_SPOP_SBC_1
0.0833
p.S287F
ACH-000882
Skin Cancer
CCLE
PHSSS
DEG_SPOP_SBC_1
0.0833
p.S287F
IGR-1
skin
COSMIC
PHSSS
DEG_SPOP_SBC_1
0.0833
p.E288D
TCGA-JY-A6FA
ESCA
TCGA
PHSSS
DEG_SPOP_SBC_1
0.1111
p.S301I
TCGA-ND-A4WC
UCS
TCGA
PHSSS
DEG_SPOP_SBC_1
0.3056
p.L293M
DO234403
ESAD
ICGC
PHSSS
DEG_SPOP_SBC_1
0.25
p.E288K
DO223046
ESCA
ICGC
PHSSS
DEG_SPOP_SBC_1
0.1111
p.K309R
DO228676
GACA
ICGC
PHSSS
DEG_SPOP_SBC_1
0.1944
p.K302Q
DO222843
MELA
ICGC
PHSSS
DEG_SPOP_SBC_1
0.2778
p.P296L
DO218856
SKCA
ICGC
PHSSS
DEG_SPOP_SBC_1
0.7582
p.L293F
DO220994
WT
ICGC
PHSSS
DEG_SPOP_SBC_1
0.25
p.A305T
SIDM00965
Small Cell Lung Carcinoma
GDSC
PHSSS
DEG_SPOP_SBC_1
0.1944
p.A305T
ACH-000800
Lung Cancer
CCLE
PHSSS
DEG_SPOP_SBC_1
0.1944
p.A305T
NCI-H446
lung
COSMIC
PHSSS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with SLITRK3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PHSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14559
Rho GTPase-activating protein 33
DEG_SPOP_SBC_1
658:662
PHSSS
SPOP
0.9958
More...
O60229
Kalirin
DEG_SPOP_SBC_1
732:736
PHSSS
SPOP
0.9258
More...
O75747
Phosphatidylinositol 3-kinase C2 domain-containing subunit gamma
DEG_SPOP_SBC_1
30:34
PHSSS
SPOP
0.9099
More...
O94933
SLIT and NTRK-like protein 3
DEG_SPOP_SBC_1
296:300
PHSSS
SPOP
0.8737
More...
P20930
Filaggrin
DEG_SPOP_SBC_1
3950:3954
PHSSS
SPOP
0.969
More...
P29372
DNA-3-methyladenine glycosylase
DEG_SPOP_SBC_1
45:49
PHSSS
SPOP
0.9962
More...
P48436
Transcription factor SOX-9
DEG_SPOP_SBC_1
212:216
PHSSS
SPOP
0.9783
More...
Q02817
Mucin-2
DEG_SPOP_SBC_1
4662:4666
PHSSS
SPOP
0.7998
More...
Q13129
Zinc finger protein Rlf
DEG_SPOP_SBC_1
1828:1832
PHSSS
SPOP
0.9974
More...
Q14C86
GTPase-activating protein and VPS9 domain-containing protein 1
DEG_SPOP_SBC_1
944:948
PHSSS
SPOP
0.9376
More...
Q68DE3
Basic helix-loop-helix domain-containing protein USF3
DEG_SPOP_SBC_1
304:308
PHSSS
SPOP
0.9956
More...
Q76I76
Protein phosphatase Slingshot homolog 2
DEG_SPOP_SBC_1
1079:1083
PHSSS
SPOP
0.7902
More...
Q76I76
Protein phosphatase Slingshot homolog 2
DEG_SPOP_SBC_1
1213:1217
PHSSS
SPOP
0.9976
More...
Q8IYI8
Zinc finger protein 440
DEG_SPOP_SBC_1
378:382
PHSSS
SPOP
0.7442
More...
Q8NEL9
Phospholipase DDHD1
DEG_SPOP_SBC_1
802:806
PHSSS
SPOP
0.812
More...
Q8TDJ6
DmX-like protein 2
DEG_SPOP_SBC_1
956:960
PHSSS
SPOP
0.985
More...
Q96G01
Protein bicaudal D homolog 1
DEG_SPOP_SBC_1
957:961
PHSSS
SPOP
0.9246
More...
Q9C0B5
Palmitoyltransferase ZDHHC5
DEG_SPOP_SBC_1
368:372
PHSSS
SPOP
0.9986
More...
Q9HCH0
Nck-associated protein 5-like
DEG_SPOP_SBC_1
424:428
PHSSS
SPOP
0.8761
More...
Q9UIF9
Bromodomain adjacent to zinc finger domain protein 2A
DEG_SPOP_SBC_1
74:78
PHSSS
SPOP
0.969
More...
Q5VYM1
Uncharacterized protein C9orf131
DEG_SPOP_SBC_1
840:844
PHSSS
SPOP
0.8857
More...
Q9P1A2
Putative serine/threonine-protein phosphatase 4 regulatory subunit 1-like
DEG_SPOP_SBC_1
345:349
PHSSS
SPOP
0.5244
More...
Q9H6K5
Proline-rich protein 36
DEG_SPOP_SBC_1
357:361
PHSSS
SPOP
0.9525
More...