DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPHY
Uniprot ID:
O94855
Source protein:
Protein transport protein Sec24D
Source gene:
SEC24D
Class:
ITCH
Location:
23:26
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.9579
ASA_SCORE:
78.4
COIL:
0.9213
CONS_SCORE:
0.2498
DSS_SCORE:
0.6798
HELIX:
0.0273
FCONS_SCORE:
0.9462
RIG_SCORE:
0.5709
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G27E
TCGA-DF-A2KU
UCEC
TCGA
PPHY
ITCH
0.3056
p.G27E
DO223286
UCEC
ICGC
PPHY
ITCH
0.3056
p.H25Y
TCGA-ET-A25O
THCA
TCGA
PPHY
ITCH
0.6118
p.H25Y
DO38980
THCA
ICGC
PPHY
ITCH
0.6118
p.P17T
DO228978
LICA
ICGC
PPHY
ITCH
0.1667
p.P17T
DO229025
LICA
ICGC
PPHY
ITCH
0.1667
p.T35K
DO229015
LICA
ICGC
PPHY
ITCH
0.0833
p.H34Q
DO229026
LICA
ICGC
PPHY
ITCH
0.1111
p.G18R
DO228603
PRAD
ICGC
PPHY
ITCH
0.1944
p.Y29C
SIDM00491
Thyroid Gland Carcinoma
GDSC
PPHY
ITCH
0.25
p.Y29C
SIDM00555
Glioblastoma
GDSC
PPHY
ITCH
0.25
p.Y29C
SIDM00355
Non-Small Cell Lung Carcinoma
GDSC
PPHY
ITCH
0.25
p.Y29C
SIDM00502
B-Lymphoblastic Leukemia
GDSC
PPHY
ITCH
0.25
p.Y29C
SIDM00359
Colorectal Carcinoma
GDSC
PPHY
ITCH
0.25
p.Y29C
SIDM01439
Hepatocellular Carcinoma
GDSC
PPHY
ITCH
0.25
p.Y29C
SIDM00169
Head and Neck Carcinoma
GDSC
PPHY
ITCH
0.25
p.Y29C
SIDM01685
B-Lymphoblastic Leukemia
GDSC
PPHY
ITCH
0.25
p.Y29C
SIDM00164
Biliary Tract Carcinoma
GDSC
PPHY
ITCH
0.25
p.P32S
SIDM00650
Small Cell Lung Carcinoma
GDSC
PPHY
ITCH
0.1667
p.P32S
SIDM01681
Non-Cancerous
GDSC
PPHY
ITCH
0.1667
p.P32S
ACH-002362
Non-Cancerous
CCLE
PPHY
ITCH
0.1667
p.P23A
SIDM00929
Chondrosarcoma
GDSC
PPHY
ITCH
0.7503
p.P23A
ACH-000516
Bone Cancer
CCLE
PPHY
ITCH
0.7503
p.P23A
CAL-78
bone
COSMIC
PPHY
ITCH
0.7503
p.D24N
ACH-000112
Leukemia
CCLE
PPHY
ITCH
0.6932
p.D24N
SIG-M5
haematopoietic_and_lymphoid_tissue
COSMIC
PPHY
ITCH
0.6932
p.C18Y
HCC2998
large_intestine
COSMIC
PPHY
ITCH
0.1944
Drug responses associated with SEC24D mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPHY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15156
Zinc finger and BTB domain-containing protein 7B
ITCH
468:471
PPHY
ITCH,NEDD4
0.632
More...
O75081
Protein CBFA2T3
ITCH
339:342
PPHY
ITCH,NEDD4
0.9949
More...
O75618
Death effector domain-containing protein
ITCH
146:149
PPHY
ITCH,NEDD4
0.9035
More...
O75923
Dysferlin
ITCH
194:197
PPHY
ITCH,NEDD4
0.877
More...
O94855
Protein transport protein Sec24D
ITCH
23:26
PPHY
ITCH,NEDD4
0.9579
More...
P14866
Heterogeneous nuclear ribonucleoprotein L
ITCH
337:340
PPHY
ITCH,NEDD4
0.9935
More...
P56693
Transcription factor SOX-10
ITCH
366:369
PPHY
ITCH,NEDD4
0.9951
More...
P62072
Mitochondrial import inner membrane translocase subunit Tim10
ITCH
35:38
PPHY
ITCH,NEDD4
0.6439
More...
P98160
Basement membrane-specific heparan sulfate proteoglycan core protein
ITCH
1704:1707
PPHY
ITCH,NEDD4
0.6355
More...
Q13227
G protein pathway suppressor 2
ITCH
194:197
PPHY
ITCH,NEDD4
0.9693
More...
Q13621
Solute carrier family 12 member 1
ITCH
42:45
PPHY
ITCH,NEDD4
0.9792
More...
Q6W2J9
BCL-6 corepressor
ITCH
249:252
PPHY
ITCH,NEDD4
0.7281
More...
Q6ZRV2
Protein FAM83H
ITCH
21:24
PPHY
ITCH,NEDD4
0.9628
More...
Q7Z4S6
Kinesin-like protein KIF21A
ITCH
1540:1543
PPHY
ITCH,NEDD4
0.7904
More...
Q86Y56
Dynein axonemal assembly factor 5
ITCH
335:338
PPHY
ITCH,NEDD4
0.6455
More...
Q8NC67
Neuropilin and tolloid-like protein 2
ITCH
395:398
PPHY
ITCH,NEDD4
0.9529
More...
Q8NEA6
Zinc finger protein GLIS3
ITCH
680:683
PPHY
ITCH,NEDD4
0.969
More...
Q8NFH8
RalBP1-associated Eps domain-containing protein 2
ITCH
200:203
PPHY
ITCH,NEDD4
0.9985
More...
Q9NZB2
Constitutive coactivator of PPAR-gamma-like protein 1
ITCH
339:342
PPHY
ITCH,NEDD4
0.7758
More...
Q9Y2G1
Myelin regulatory factor
ITCH
195:198
PPHY
ITCH,NEDD4
0.9944
More...
Q9Y2K2
Serine/threonine-protein kinase SIK3
ITCH
939:942
PPHY
ITCH,NEDD4
0.9973
More...
Q8TF68
Zinc finger protein 384
ITCH
46:49
PPHY
ITCH,NEDD4
0.9991
More...
Q96A35
39S ribosomal protein L24, mitochondrial
ITCH
16:19
PPHY
ITCH,NEDD4
0.837
More...