DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPHY
Uniprot ID:
P98160
Source protein:
Basement membrane-specific heparan sulfate proteoglycan core protein
Source gene:
HSPG2
Class:
ITCH
Location:
1704:1707
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.6355
ASA_SCORE:
72.85
COIL:
0.6275
CONS_SCORE:
0.3742
DSS_SCORE:
0.4363
HELIX:
0.011
FCONS_SCORE:
1.1357
RIG_SCORE:
0.6699
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R1716W
TCGA-2W-A8YY
CESC
TCGA
PPHY
ITCH
0.0833
p.R1716W
DO223732
CESC
ICGC
PPHY
ITCH
0.0833
p.S1695F
TCGA-90-A4ED
LUSC
TCGA
PPHY
ITCH
0.0833
p.S1695F
TCGA-L5-A43I
ESCA
TCGA
PPHY
ITCH
0.0833
p.S1695F
DO233793
GACA
ICGC
PPHY
ITCH
0.0833
p.S1695F
DO45482
LUSC
ICGC
PPHY
ITCH
0.0833
p.S1695F
SIDM01106
Melanoma
GDSC
PPHY
ITCH
0.0833
p.S1695F
ACH-000822
Skin Cancer
CCLE
PPHY
ITCH
0.0833
p.S1695F
SK-MEL-24
skin
COSMIC
PPHY
ITCH
0.0833
p.R1712C
TCGA-AJ-A3BH
UCEC
TCGA
PPHY
ITCH
0.1944
p.R1712C
TCGA-FD-A62S
BLCA
TCGA
PPHY
ITCH
0.1944
p.R1712C
DO44044
BLCA
ICGC
PPHY
ITCH
0.1944
p.R1712C
DO41638
UCEC
ICGC
PPHY
ITCH
0.1944
p.S1711P
TCGA-CI-6621
READ
TCGA
PPHY
ITCH
0.2222
p.S1711P
DO36970
READ
ICGC
PPHY
ITCH
0.2222
p.Q1699K
TCGA-D3-A1Q1
SKCM
TCGA
PPHY
ITCH
0.1944
p.Q1699K
DO37445
SKCM
ICGC
PPHY
ITCH
0.1944
p.P1705L
TCGA-EE-A2MH
SKCM
TCGA
PPHY
ITCH
0.7582
p.P1705L
DO222628
MELA
ICGC
PPHY
ITCH
0.7582
p.P1705L
DO37539
SKCM
ICGC
PPHY
ITCH
0.7582
p.Q1699H
TCGA-EE-A3AD
SKCM
TCGA
PPHY
ITCH
0.1944
p.Q1699H
DO37707
SKCM
ICGC
PPHY
ITCH
0.1944
p.R1697L
TCGA-FS-A1ZR
SKCM
TCGA
PPHY
ITCH
0.1389
p.R1697L
DO37651
SKCM
ICGC
PPHY
ITCH
0.1389
p.R1697W
TCGA-MX-A5UJ
STAD
TCGA
PPHY
ITCH
0.1389
p.R1697W
DO233940
GACA
ICGC
PPHY
ITCH
0.1389
p.R1697W
DO48547
STAD
ICGC
PPHY
ITCH
0.1389
p.R1697W
SIDM00216
Colorectal Carcinoma
GDSC
PPHY
ITCH
0.1389
p.R1697W
SIDM01154
T-Lymphoblastic Leukemia
GDSC
PPHY
ITCH
0.1389
p.R1697W
ACH-000953
Leukemia
CCLE
PPHY
ITCH
0.1389
p.R1697W
ACH-000989
Colon/Colorectal Cancer
CCLE
PPHY
ITCH
0.1389
p.R1697W
SUP-T1
haematopoietic_and_lymphoid_tissue
COSMIC
PPHY
ITCH
0.1389
p.H1706N
DO229022
LICA
ICGC
PPHY
ITCH
0.6312
p.R1716L
DO41199
UCEC
ICGC
PPHY
ITCH
0.0833
p.V1700F
SIDM00511
Small Cell Lung Carcinoma
GDSC
PPHY
ITCH
0.2222
p.V1700F
ACH-000257
Lung Cancer
CCLE
PPHY
ITCH
0.2222
p.V1700F
COR-L279
lung
COSMIC
PPHY
ITCH
0.2222
p.Q1699P
SIDM01150
Non-Small Cell Lung Carcinoma
GDSC
PPHY
ITCH
0.1944
p.Q1699P
ACH-000416
Lung Cancer
CCLE
PPHY
ITCH
0.1944
p.Q1699P
NCI-H838
lung
COSMIC
PPHY
ITCH
0.1944
Drug responses associated with HSPG2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPHY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15156
Zinc finger and BTB domain-containing protein 7B
ITCH
468:471
PPHY
ITCH,NEDD4
0.632
More...
O75081
Protein CBFA2T3
ITCH
339:342
PPHY
ITCH,NEDD4
0.9949
More...
O75618
Death effector domain-containing protein
ITCH
146:149
PPHY
ITCH,NEDD4
0.9035
More...
O75923
Dysferlin
ITCH
194:197
PPHY
ITCH,NEDD4
0.877
More...
O94855
Protein transport protein Sec24D
ITCH
23:26
PPHY
ITCH,NEDD4
0.9579
More...
P14866
Heterogeneous nuclear ribonucleoprotein L
ITCH
337:340
PPHY
ITCH,NEDD4
0.9935
More...
P56693
Transcription factor SOX-10
ITCH
366:369
PPHY
ITCH,NEDD4
0.9951
More...
P62072
Mitochondrial import inner membrane translocase subunit Tim10
ITCH
35:38
PPHY
ITCH,NEDD4
0.6439
More...
P98160
Basement membrane-specific heparan sulfate proteoglycan core protein
ITCH
1704:1707
PPHY
ITCH,NEDD4
0.6355
More...
Q13227
G protein pathway suppressor 2
ITCH
194:197
PPHY
ITCH,NEDD4
0.9693
More...
Q13621
Solute carrier family 12 member 1
ITCH
42:45
PPHY
ITCH,NEDD4
0.9792
More...
Q6W2J9
BCL-6 corepressor
ITCH
249:252
PPHY
ITCH,NEDD4
0.7281
More...
Q6ZRV2
Protein FAM83H
ITCH
21:24
PPHY
ITCH,NEDD4
0.9628
More...
Q7Z4S6
Kinesin-like protein KIF21A
ITCH
1540:1543
PPHY
ITCH,NEDD4
0.7904
More...
Q86Y56
Dynein axonemal assembly factor 5
ITCH
335:338
PPHY
ITCH,NEDD4
0.6455
More...
Q8NC67
Neuropilin and tolloid-like protein 2
ITCH
395:398
PPHY
ITCH,NEDD4
0.9529
More...
Q8NEA6
Zinc finger protein GLIS3
ITCH
680:683
PPHY
ITCH,NEDD4
0.969
More...
Q8NFH8
RalBP1-associated Eps domain-containing protein 2
ITCH
200:203
PPHY
ITCH,NEDD4
0.9985
More...
Q9NZB2
Constitutive coactivator of PPAR-gamma-like protein 1
ITCH
339:342
PPHY
ITCH,NEDD4
0.7758
More...
Q9Y2G1
Myelin regulatory factor
ITCH
195:198
PPHY
ITCH,NEDD4
0.9944
More...
Q9Y2K2
Serine/threonine-protein kinase SIK3
ITCH
939:942
PPHY
ITCH,NEDD4
0.9973
More...
Q8TF68
Zinc finger protein 384
ITCH
46:49
PPHY
ITCH,NEDD4
0.9991
More...
Q96A35
39S ribosomal protein L24, mitochondrial
ITCH
16:19
PPHY
ITCH,NEDD4
0.837
More...