DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPHY
Uniprot ID:
P14866
Source protein:
Heterogeneous nuclear ribonucleoprotein L
Source gene:
HNRNPL
Class:
ITCH
Location:
337:340
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.9935
ASA_SCORE:
52.9
COIL:
0.8748
CONS_SCORE:
0.3464
DSS_SCORE:
0.6803
HELIX:
0.0478
FCONS_SCORE:
1.0195
RIG_SCORE:
0.5873
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E341K
TCGA-C5-A1MI
CESC
TCGA
PPHY
ITCH
0.3056
p.M345I
TCGA-FS-A1ZQ
SKCM
TCGA
PPHY
ITCH
0.1944
p.M345I
ACH-000717
Esophageal Cancer
CCLE
PPHY
ITCH
0.1944
p.S331L
DO2401
BRCA
ICGC
PPHY
ITCH
0.1667
p.R348Q
DO22920
LIHC
ICGC
PPHY
ITCH
0.1111
p.R348W
DO38607
STAD
ICGC
PPHY
ITCH
0.1111
p.S345G
DO40804
UCEC
ICGC
PPHY
ITCH
0.1944
p.P335A
SIDM01016
T-Lymphoblastic Leukemia
GDSC
PPHY
ITCH
0.2778
p.P335A
ACH-000995
Leukemia
CCLE
PPHY
ITCH
0.2778
p.P338A
SIDM00047
Non-Small Cell Lung Carcinoma
GDSC
PPHY
ITCH
0.7503
p.H339Y
SIDM01624
Bladder Carcinoma
GDSC
PPHY
ITCH
0.6118
p.H339Y
ACH-000026
Bladder Cancer
CCLE
PPHY
ITCH
0.6118
Drug responses associated with HNRNPL mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPHY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15156
Zinc finger and BTB domain-containing protein 7B
ITCH
468:471
PPHY
ITCH,NEDD4
0.632
More...
O75081
Protein CBFA2T3
ITCH
339:342
PPHY
ITCH,NEDD4
0.9949
More...
O75618
Death effector domain-containing protein
ITCH
146:149
PPHY
ITCH,NEDD4
0.9035
More...
O75923
Dysferlin
ITCH
194:197
PPHY
ITCH,NEDD4
0.877
More...
O94855
Protein transport protein Sec24D
ITCH
23:26
PPHY
ITCH,NEDD4
0.9579
More...
P14866
Heterogeneous nuclear ribonucleoprotein L
ITCH
337:340
PPHY
ITCH,NEDD4
0.9935
More...
P56693
Transcription factor SOX-10
ITCH
366:369
PPHY
ITCH,NEDD4
0.9951
More...
P62072
Mitochondrial import inner membrane translocase subunit Tim10
ITCH
35:38
PPHY
ITCH,NEDD4
0.6439
More...
P98160
Basement membrane-specific heparan sulfate proteoglycan core protein
ITCH
1704:1707
PPHY
ITCH,NEDD4
0.6355
More...
Q13227
G protein pathway suppressor 2
ITCH
194:197
PPHY
ITCH,NEDD4
0.9693
More...
Q13621
Solute carrier family 12 member 1
ITCH
42:45
PPHY
ITCH,NEDD4
0.9792
More...
Q6W2J9
BCL-6 corepressor
ITCH
249:252
PPHY
ITCH,NEDD4
0.7281
More...
Q6ZRV2
Protein FAM83H
ITCH
21:24
PPHY
ITCH,NEDD4
0.9628
More...
Q7Z4S6
Kinesin-like protein KIF21A
ITCH
1540:1543
PPHY
ITCH,NEDD4
0.7904
More...
Q86Y56
Dynein axonemal assembly factor 5
ITCH
335:338
PPHY
ITCH,NEDD4
0.6455
More...
Q8NC67
Neuropilin and tolloid-like protein 2
ITCH
395:398
PPHY
ITCH,NEDD4
0.9529
More...
Q8NEA6
Zinc finger protein GLIS3
ITCH
680:683
PPHY
ITCH,NEDD4
0.969
More...
Q8NFH8
RalBP1-associated Eps domain-containing protein 2
ITCH
200:203
PPHY
ITCH,NEDD4
0.9985
More...
Q9NZB2
Constitutive coactivator of PPAR-gamma-like protein 1
ITCH
339:342
PPHY
ITCH,NEDD4
0.7758
More...
Q9Y2G1
Myelin regulatory factor
ITCH
195:198
PPHY
ITCH,NEDD4
0.9944
More...
Q9Y2K2
Serine/threonine-protein kinase SIK3
ITCH
939:942
PPHY
ITCH,NEDD4
0.9973
More...
Q8TF68
Zinc finger protein 384
ITCH
46:49
PPHY
ITCH,NEDD4
0.9991
More...
Q96A35
39S ribosomal protein L24, mitochondrial
ITCH
16:19
PPHY
ITCH,NEDD4
0.837
More...