DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPKY
Uniprot ID:
Q08174
Source protein:
Protocadherin-1
Source gene:
PCDH1
Class:
ITCH
Location:
1026:1029
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.9976
ASA_SCORE:
100.5
COIL:
0.9428
CONS_SCORE:
0.5699
DSS_SCORE:
0.6224
HELIX:
0.0198
FCONS_SCORE:
1.1637
RIG_SCORE:
0.6525
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R1023L
TCGA-69-7978
LUAD
TCGA
PPKY
ITCH
0.25
p.R1023L
DO24920
LUAD
ICGC
PPKY
ITCH
0.25
p.R1023S
TCGA-77-7465
LUSC
TCGA
PPKY
ITCH
0.25
p.R1023S
DO27699
LUSC
ICGC
PPKY
ITCH
0.25
p.P1030T
TCGA-EI-6882
READ
TCGA
PPKY
ITCH
0.3056
p.P1030T
DO36531
READ
ICGC
PPKY
ITCH
0.3056
p.R1023H
TCGA-F1-6874
STAD
TCGA
PPKY
ITCH
0.25
p.R1023H
DO38201
STAD
ICGC
PPKY
ITCH
0.25
p.S1031N
TCGA-VQ-A91K
STAD
TCGA
PPKY
ITCH
0.2778
p.S1031N
DO51785
STAD
ICGC
PPKY
ITCH
0.2778
p.S1018F
TCGA-WE-A8ZT
SKCM
TCGA
PPKY
ITCH
0.5556
p.S1018F
DO51290
SKCM
ICGC
PPKY
ITCH
0.5556
p.S1031R
DO229015
LICA
ICGC
PPKY
ITCH
0.2778
p.P1030H
DO229015
LICA
ICGC
PPKY
ITCH
0.3056
p.K1028N
ACH-001119
Lymphoma
CCLE
PPKY
ITCH
0.5806
Drug responses associated with PCDH1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPKY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O94964
Protein SOGA1
ITCH
1284:1287
PPKY
ITCH,NEDD4
0.7887
More...
P20810
Calpastatin
ITCH
202:205
PPKY
ITCH,NEDD4
0.937
More...
P29144
Tripeptidyl-peptidase 2
ITCH
942:945
PPKY
ITCH,NEDD4
0.8785
More...
P51170
Amiloride-sensitive sodium channel subunit gamma
ITCH
624:627
PPKY
ITCH,NEDD4
0.9353
More...
P54259
Atrophin-1
ITCH
424:427
PPKY
ITCH,NEDD4
0.9876
More...
Q00688
Peptidyl-prolyl cis-trans isomerase FKBP3
ITCH
108:111
PPKY
ITCH,NEDD4
0.9478
More...
Q06190
Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha
ITCH
331:334
PPKY
ITCH,NEDD4
0.9998
More...
Q08174
Protocadherin-1
ITCH
1026:1029
PPKY
ITCH,NEDD4
0.9976
More...
Q71F56
Mediator of RNA polymerase II transcription subunit 13-like
ITCH
1526:1529
PPKY
ITCH,NEDD4
0.9925
More...
Q8N6H7
ADP-ribosylation factor GTPase-activating protein 2
ITCH
355:358
PPKY
ITCH,NEDD4
0.9993
More...
Q8WWU5
T-complex protein 11 homolog
ITCH
9:12
PPKY
ITCH,NEDD4
0.9918
More...
Q8WZ42
Titin
ITCH
23191:23194
PPKY
ITCH,NEDD4
0.7018
More...
Q8WZ42
Titin
ITCH
27520:27523
PPKY
ITCH,NEDD4
0.6774
More...
Q96B18
Dapper homolog 3
ITCH
441:444
PPKY
ITCH,NEDD4
0.9495
More...
Q96BD5
PHD finger protein 21A
ITCH
431:434
PPKY
ITCH,NEDD4
0.9794
More...
Q9UBL6
Copine-7
ITCH
443:446
PPKY
ITCH,NEDD4
0.6593
More...
Q9UPG8
Zinc finger protein PLAGL2
ITCH
339:342
PPKY
ITCH,NEDD4
0.8841
More...
Q9Y2I6
Ninein-like protein
ITCH
99:102
PPKY
ITCH,NEDD4
0.5986
More...
Q9Y696
Chloride intracellular channel protein 4
ITCH
101:104
PPKY
ITCH,NEDD4
0.8903
More...
Q9BZD7
Transmembrane gamma-carboxyglutamic acid protein 3
ITCH
216:219
PPKY
ITCH,NEDD4
0.9823
More...
A8K0R7
Zinc finger protein 839
ITCH
140:143
PPKY
ITCH,NEDD4
0.8006
More...
Q2M218
Zinc finger protein 630
ITCH
212:215
PPKY
ITCH,NEDD4
0.5506
More...
Q5SZD1
Uncharacterized protein C6orf141
ITCH
154:157
PPKY
ITCH,NEDD4
0.7621
More...
Q8NDZ0
BEN domain-containing protein 2
ITCH
473:476
PPKY
ITCH,NEDD4
0.9633
More...
Q0VF49
Uncharacterized protein KIAA2012
ITCH
206:209
PPKY
ITCH,NEDD4
0.9964
More...
