DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTTSS
Uniprot ID:
Q9H254
Source protein:
Spectrin beta chain, non-erythrocytic 4
Source gene:
SPTBN4
Class:
DEG_SPOP_SBC_1
Location:
2540:2544
E3 ligase:
SPOP
DEGRON score:
0.9961
ASA_SCORE:
88.74
COIL:
0.9544
CONS_SCORE:
0.3751
DSS_SCORE:
0.6847
HELIX:
0.0252
FCONS_SCORE:
1.0668
RIG_SCORE:
0.6501
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R2552K
TCGA-55-6972
LUAD
TCGA
PTTSS
DEG_SPOP_SBC_1
0.1111
p.R2552K
DO25010
LUAD
ICGC
PTTSS
DEG_SPOP_SBC_1
0.1111
p.A2533T
TCGA-77-8140
LUSC
TCGA
PTTSS
DEG_SPOP_SBC_1
0.1389
p.A2533T
DO26834
LUSC
ICGC
PTTSS
DEG_SPOP_SBC_1
0.1389
p.G2536D
TCGA-BF-AAOU
SKCM
TCGA
PTTSS
DEG_SPOP_SBC_1
0.2222
p.G2536D
DO219460
SKCM
ICGC
PTTSS
DEG_SPOP_SBC_1
0.2222
p.S2544C
TCGA-EL-A3ZO
THCA
TCGA
PTTSS
DEG_SPOP_SBC_1
0.7541
p.S2544C
DO49869
THCA
ICGC
PTTSS
DEG_SPOP_SBC_1
0.7541
p.R2534H
DO233210
GACA
ICGC
PTTSS
DEG_SPOP_SBC_1
0.1667
p.A2530S
DO229026
LICA
ICGC
PTTSS
DEG_SPOP_SBC_1
0.0556
p.A2530S
SIDM00117
Non-Small Cell Lung Carcinoma
GDSC
PTTSS
DEG_SPOP_SBC_1
0.0556
p.A2530S
ACH-000837
Lung Cancer
CCLE
PTTSS
DEG_SPOP_SBC_1
0.0556
p.A2530S
NCI-H322M
lung
COSMIC
PTTSS
DEG_SPOP_SBC_1
0.0556
p.Q2537H
DO50817
LIRI
ICGC
PTTSS
DEG_SPOP_SBC_1
0.25
p.W2535R
SIDM00846
Cervical Carcinoma
GDSC
PTTSS
DEG_SPOP_SBC_1
0.1944
p.W2535R
ACH-001086
Cervical Cancer
CCLE
PTTSS
DEG_SPOP_SBC_1
0.1944
p.W2535R
HeLa
cervix
COSMIC
PTTSS
DEG_SPOP_SBC_1
0.1944
p.K2551N
SIDM00006
Other Solid Cancers
GDSC
PTTSS
DEG_SPOP_SBC_1
0.25
p.K2551N
ACH-001552
Skin Cancer
CCLE
PTTSS
DEG_SPOP_SBC_1
0.25
p.K2551N
MCC26
skin
COSMIC
PTTSS
DEG_SPOP_SBC_1
0.25
Drug responses associated with SPTBN4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14776
Transcription elongation regulator 1
DEG_SPOP_SBC_1
261:265
PTTSS
SPOP
0.9948
More...
O15054
Lysine-specific demethylase 6B
DEG_SPOP_SBC_1
549:553
PTTSS
SPOP
0.8155
More...
O60336
Mitogen-activated protein kinase-binding protein 1
DEG_SPOP_SBC_1
1250:1254
PTTSS
SPOP
0.9955
More...
P35869
Aryl hydrocarbon receptor
DEG_SPOP_SBC_1
730:734
PTTSS
SPOP
0.9973
More...
P55055
Oxysterols receptor LXR-beta
DEG_SPOP_SBC_1
4:8
PTTSS
SPOP
0.9972
More...
Q12955
Ankyrin-3
DEG_SPOP_SBC_1
2207:2211
PTTSS
SPOP
0.9961
More...
Q15915
Zinc finger protein ZIC 1
DEG_SPOP_SBC_1
417:421
PTTSS
SPOP
0.9909
More...
Q7Z7G0
Target of Nesh-SH3
DEG_SPOP_SBC_1
341:345
PTTSS
SPOP
0.992
More...
Q8IZF0
Sodium leak channel NALCN
DEG_SPOP_SBC_1
682:686
PTTSS
SPOP
0.8231
More...
Q8N0V3
Putative ribosome-binding factor A, mitochondrial
DEG_SPOP_SBC_1
230:234
PTTSS
SPOP
0.9938
More...
Q8N7W2
BEN domain-containing protein 7
DEG_SPOP_SBC_1
144:148
PTTSS
SPOP
0.6957
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
6756:6760
PTTSS
SPOP
0.7898
More...
Q9BRK4
Leucine zipper putative tumor suppressor 2
DEG_SPOP_SBC_1
238:242
PTTSS
SPOP
0.9196
More...
Q9H1H9
Kinesin-like protein KIF13A
DEG_SPOP_SBC_1
1590:1594
PTTSS
SPOP
0.9958
More...
Q9H254
Spectrin beta chain, non-erythrocytic 4
DEG_SPOP_SBC_1
2540:2544
PTTSS
SPOP
0.9961
More...
Q9Y5J3
Hairy/enhancer-of-split related with YRPW motif protein 1
DEG_SPOP_SBC_1
41:45
PTTSS
SPOP
0.6104
More...
Q9H3M9
Ataxin-3-like protein
DEG_SPOP_SBC_1
314:318
PTTSS
SPOP
0.999
More...
O75333
T-box transcription factor TBX10
DEG_SPOP_SBC_1
21:25
PTTSS
SPOP
0.988
More...
Q5JXX7
Transmembrane protein 31
DEG_SPOP_SBC_1
60:64
PTTSS
SPOP
0.5118
More...