DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VPSST
Uniprot ID:
O14513
Source protein:
Nck-associated protein 5
Source gene:
NCKAP5
Class:
DEG_SPOP_SBC_1
Location:
1773:1777
E3 ligase:
SPOP
DEGRON score:
0.9973
ASA_SCORE:
83.36
COIL:
0.9454
CONS_SCORE:
1
DSS_SCORE:
0.7292
HELIX:
0.0298
FCONS_SCORE:
1.6924
RIG_SCORE:
0.631
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.I1787T
TCGA-22-4613
LUSC
TCGA
VPSST
DEG_SPOP_SBC_1
0.0556
p.I1787T
DO26468
LUSC
ICGC
VPSST
DEG_SPOP_SBC_1
0.0556
p.L1769F
TCGA-3N-A9WC
SKCM
TCGA
VPSST
DEG_SPOP_SBC_1
0.2222
p.L1769F
DO51234
SKCM
ICGC
VPSST
DEG_SPOP_SBC_1
0.2222
p.M1764I
TCGA-55-1592
LUAD
TCGA
VPSST
DEG_SPOP_SBC_1
0.0833
p.M1764I
DO23556
LUAD
ICGC
VPSST
DEG_SPOP_SBC_1
0.0833
p.S1785R
TCGA-55-6972
LUAD
TCGA
VPSST
DEG_SPOP_SBC_1
0.1111
p.S1785R
DO25010
LUAD
ICGC
VPSST
DEG_SPOP_SBC_1
0.1111
p.D1784V
TCGA-90-7769
LUSC
TCGA
VPSST
DEG_SPOP_SBC_1
0.1389
p.D1784V
DO26822
LUSC
ICGC
VPSST
DEG_SPOP_SBC_1
0.1389
p.L1769R
TCGA-AA-3977
COAD
TCGA
VPSST
DEG_SPOP_SBC_1
0.2222
p.L1769R
DO8730
COAD
ICGC
VPSST
DEG_SPOP_SBC_1
0.2222
p.P1782R
TCGA-DU-6396
LGG
TCGA
VPSST
DEG_SPOP_SBC_1
0.1944
p.P1782R
DO22143
LGG
ICGC
VPSST
DEG_SPOP_SBC_1
0.1944
p.R1765G
TCGA-FI-A2D6
UCEC
TCGA
VPSST
DEG_SPOP_SBC_1
0.1111
p.R1765G
DO43867
UCEC
ICGC
VPSST
DEG_SPOP_SBC_1
0.1111
p.D1778A
TCGA-L5-A43J
ESCA
TCGA
VPSST
DEG_SPOP_SBC_1
0.3056
p.A1766V
TCGA-SW-A7EA
STAD
TCGA
VPSST
DEG_SPOP_SBC_1
0.1389
p.A1766V
DO51749
STAD
ICGC
VPSST
DEG_SPOP_SBC_1
0.1389
p.R1771C
DO233270
GACA
ICGC
VPSST
DEG_SPOP_SBC_1
0.2778
p.R1771H
DO228138
PBCA
ICGC
VPSST
DEG_SPOP_SBC_1
0.2778
p.M1764V
DO50432
PRAD
ICGC
VPSST
DEG_SPOP_SBC_1
0.0833
p.A1783E
DO50415
PRAD
ICGC
VPSST
DEG_SPOP_SBC_1
0.1667
p.S1763Y
DO46941
RECA
ICGC
VPSST
DEG_SPOP_SBC_1
0.0556
p.A1766T
DO46941
RECA
ICGC
VPSST
DEG_SPOP_SBC_1
0.1389
p.G1779S
SIDM01295
Pancreatic Carcinoma
GDSC
VPSST
DEG_SPOP_SBC_1
0.2778
p.R1781H
SIDM00596
Endometrial Carcinoma
GDSC
VPSST
DEG_SPOP_SBC_1
0.2222
p.R1781H
SIDM00487
Colorectal Carcinoma
GDSC
VPSST
DEG_SPOP_SBC_1
0.2222
p.R1781H
ACH-000941
Endometrial/Uterine Cancer
CCLE
VPSST
DEG_SPOP_SBC_1
0.2222
p.R1781H
ACH-000954
Endometrial/Uterine Cancer
CCLE
VPSST
DEG_SPOP_SBC_1
0.2222
p.R1781H
ACH-000963
Colon/Colorectal Cancer
CCLE
VPSST
DEG_SPOP_SBC_1
0.2222
p.R1781H
ACH-001517
Endometrial/Uterine Cancer
CCLE
VPSST
DEG_SPOP_SBC_1
0.2222
p.R1781H
ACH-001991
Primary
CCLE
VPSST
DEG_SPOP_SBC_1
0.2222
p.R1781H
CCK-81
large_intestine
COSMIC
VPSST
DEG_SPOP_SBC_1
0.2222
p.R1781H
HEC-1
endometrium
COSMIC
VPSST
DEG_SPOP_SBC_1
0.2222
p.S1763F
ACH-001568
Skin Cancer
CCLE
VPSST
DEG_SPOP_SBC_1
0.0556
Drug responses associated with NCKAP5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43451
Maltase-glucoamylase
DEG_SPOP_SBC_1
1969:1973
VPSST
SPOP
0.5297
More...
O75509
Tumor necrosis factor receptor superfamily member 21
DEG_SPOP_SBC_1
241:245
VPSST
SPOP
0.9727
More...
P15941
Mucin-1
DEG_SPOP_SBC_1
45:49
VPSST
SPOP
0.9082
More...
P19438
Tumor necrosis factor receptor superfamily member 1A
DEG_SPOP_SBC_1
288:292
VPSST
SPOP
0.9514
More...
Q9H1K0
Rabenosyn-5
DEG_SPOP_SBC_1
580:584
VPSST
SPOP
0.9962
More...
Q9H4A3
Serine/threonine-protein kinase WNK1
DEG_SPOP_SBC_1
156:160
VPSST
SPOP
0.8129
More...
Q9H4W6
Transcription factor COE3
DEG_SPOP_SBC_1
473:477
VPSST
SPOP
0.9884
More...
Q9H9J4
Ubiquitin carboxyl-terminal hydrolase 42
DEG_SPOP_SBC_1
553:557
VPSST
SPOP
0.9515
More...
Q9NYB9
Abl interactor 2
DEG_SPOP_SBC_1
310:314
VPSST
SPOP
0.9925
More...
O14513
Nck-associated protein 5
DEG_SPOP_SBC_1
1773:1777
VPSST
SPOP
0.9973
More...
Q5T8P6
RNA-binding protein 26
DEG_SPOP_SBC_1
643:647
VPSST
SPOP
0.9721
More...
Q9NRJ5
Poly
DEG_SPOP_SBC_1
536:540
VPSST
SPOP
0.998
More...
Q6ZNC4
Zinc finger protein 704
DEG_SPOP_SBC_1
121:125
VPSST
SPOP
0.9625
More...
Q96LR7
Uncharacterized protein C2orf50
DEG_SPOP_SBC_1
119:123
VPSST
SPOP
0.8932
More...