DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
VPSST
Uniprot ID:
Q5T8P6
Source protein:
RNA-binding protein 26
Source gene:
RBM26
Class:
DEG_SPOP_SBC_1
Location:
643:647
E3 ligase:
SPOP
DEGRON score:
0.9721
ASA_SCORE:
84.7
COIL:
0.9212
CONS_SCORE:
0.2072
DSS_SCORE:
0.5614
HELIX:
0.0422
FCONS_SCORE:
1.036
RIG_SCORE:
0.6476
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P639A
TCGA-AN-A0FL
BRCA
TCGA
VPSST
DEG_SPOP_SBC_1
0.2222
p.P639A
TCGA-E7-A3X6
BLCA
TCGA
VPSST
DEG_SPOP_SBC_1
0.2222
p.P639A
TCGA-GC-A3RD
BLCA
TCGA
VPSST
DEG_SPOP_SBC_1
0.2222
p.Q651K
TCGA-D3-A2JD
SKCM
TCGA
VPSST
DEG_SPOP_SBC_1
0.2222
p.P642A
DO475
BLCA
ICGC
VPSST
DEG_SPOP_SBC_1
0.3056
p.P642A
DO510
BLCA
ICGC
VPSST
DEG_SPOP_SBC_1
0.3056
p.P642A
DO1836
BRCA
ICGC
VPSST
DEG_SPOP_SBC_1
0.3056
p.S635P
DO11358
GBM
ICGC
VPSST
DEG_SPOP_SBC_1
0.5556
p.Q654K
DO37543
SKCM
ICGC
VPSST
DEG_SPOP_SBC_1
0.1389
p.A648T
ACH-001369
Ovarian Cancer
CCLE
VPSST
DEG_SPOP_SBC_1
0.3056
Drug responses associated with RBM26 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43451
Maltase-glucoamylase
DEG_SPOP_SBC_1
1969:1973
VPSST
SPOP
0.5297
More...
O75509
Tumor necrosis factor receptor superfamily member 21
DEG_SPOP_SBC_1
241:245
VPSST
SPOP
0.9727
More...
P15941
Mucin-1
DEG_SPOP_SBC_1
45:49
VPSST
SPOP
0.9082
More...
P19438
Tumor necrosis factor receptor superfamily member 1A
DEG_SPOP_SBC_1
288:292
VPSST
SPOP
0.9514
More...
Q9H1K0
Rabenosyn-5
DEG_SPOP_SBC_1
580:584
VPSST
SPOP
0.9962
More...
Q9H4A3
Serine/threonine-protein kinase WNK1
DEG_SPOP_SBC_1
156:160
VPSST
SPOP
0.8129
More...
Q9H4W6
Transcription factor COE3
DEG_SPOP_SBC_1
473:477
VPSST
SPOP
0.9884
More...
Q9H9J4
Ubiquitin carboxyl-terminal hydrolase 42
DEG_SPOP_SBC_1
553:557
VPSST
SPOP
0.9515
More...
Q9NYB9
Abl interactor 2
DEG_SPOP_SBC_1
310:314
VPSST
SPOP
0.9925
More...
O14513
Nck-associated protein 5
DEG_SPOP_SBC_1
1773:1777
VPSST
SPOP
0.9973
More...
Q5T8P6
RNA-binding protein 26
DEG_SPOP_SBC_1
643:647
VPSST
SPOP
0.9721
More...
Q9NRJ5
Poly
DEG_SPOP_SBC_1
536:540
VPSST
SPOP
0.998
More...
Q6ZNC4
Zinc finger protein 704
DEG_SPOP_SBC_1
121:125
VPSST
SPOP
0.9625
More...
Q96LR7
Uncharacterized protein C2orf50
DEG_SPOP_SBC_1
119:123
VPSST
SPOP
0.8932
More...