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Dataset Description
  • Dataset Name: 18405950
  • Species: Rat
  • Method: Microarray
  • No. of Genes: 444
  • Tissue: Nucleus accumbens and amygdala
  • Phenotype: Ethanol self-administration, alcohol-preferring
  • Publication: Rodd et al. Pharmacol Biochem Behav. (2008) Differential gene expression in the nucleus accumbens with ethanol self-administration in inbred alcohol-preferring rats. PubMed
  • Dataset Summary: The current study examined the effects of operant ethanol (EtOH) self-administration on gene expression kin the nucleus accumbens (ACB) and amygdala (AMYG) of inbred alcohol-preferring (iP) rats. Rats self-trained on a standard two-lever operant paradigm to administer either water-water, EtOH (15% v/v)-water, or saccharin (SAC; 0.0125% g/v)-water. For the ACB, there were 513 significant differences at the p < 0.01 level in named genes: 55 between SAC and water; 215 between EtOH and water, and 243 between EtOH and SAC. In the case of the AMYG (p < 0.01), there were 48 between SAC and water, 23 between EtOH and water, and 63 between EtOH and SAC group.

    Gene list of this dataset (444 genes)
    Page: 1 2 3 4 5 6 7 8 9 list all   
    GeneIDSymbolNameGenetic locationOriginal ID1Original ID2
    116508Nrxn3neurexin 36q31Nrxn3 
    25492Nfianuclear factor I/A-Nfia 
    29227Nfibnuclear factor I/B5q31Nfib 
    29227Nfibnuclear factor I/B5q31Nfib 
    25493Nfkbianuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha6q23Nfkbia 
    308870Numa1nuclear mitotic apparatus protein 11q32Numa1 
    58852Nr1h3nuclear receptor subfamily 1, group H, member 33q24Nr1h3 
    117242Odz2odd Oz/ten-m homolog 2 (Drosophila)10q12Odz2 
    81741Pctk1PCTAIRE-motif protein kinase 1Xq12Pctk1 
    83624Ppigpeptidylprolyl isomerase G3q21Ppig 
    94167Prdx6peroxiredoxin 613q22Prdx6 
    192270Ppap2bphosphatidic acid phosphatase type 2B5q34Ppap2b 
    64161Pi4kaphosphatidylinositol 4-kinase, catalytic, alpha11q23Pik4ca 
    360426Pla2g6phospholipase A2, group VI7q34Pla2g6 
    360549Plscr3phospholipid scramblase 310q24Plscr3 
    297804Plag1pleiomorphic adenoma gene 15q12Plag1 
    85242Pola2polymerase (DNA directed), alpha 21q43Pola2 
    29240Polbpolymerase (DNA directed), beta16q12.5Polb 
    252924Psg4pregnancy specific beta-1-glycoprotein 47q13Psg4 
    294279Col11a2procollagen, type XI, alpha 220p12Col11a2 
    266709Pkigprotein kinase inhibitor, gamma3q42Pkig 
    116477Wnk1WNK lysine deficient protein kinase 14q42Prkwnk1 
    85237Ptp4a2protein tyrosine phosphatase 4a2-Ptp4a2 
    117063Ptpn2protein tyrosine phosphatase, non-receptor type 218q12.1Ptpn2 
    360406Ptprfprotein tyrosine phosphatase, receptor type, F5q36Ptprf 
    24943Plp1proteolipid protein (myelin) 1Xq35Plp 
    25614Ptk2PTK2 protein tyrosine kinase 27q34Ptk2 
    310444P2ry13purinergic receptor P2Y, G-protein coupled, 132q31P2ry13 
    246251Ua20putative UA20 protein16q12.5Ua20 
    84556Rims1regulating synaptic membrane exocytosis 19q13Rims1 
    117183Rgc32response gene to complement 3215q12Rgc32 
    117183Rgc32response gene to complement 3215q12Rgc32 
    89826Rpe65retinal pigment epithelium 652q45Rpe65 
    60323Arhgef1Rho guanine nucleotide exchange factor (GEF) 11q21Arhgef1 
    310159Rnasenribonuclease III, nuclear2q16Rnasen 
    317646Rpl13aribosomal protein L13A1q22Rpl13a 
    25348Rps29ribosomal protein S296q24Rps29 
    29288Rps3aribosomal protein S3a2q34Rps3a 
    117269Rps6ka2ribosomal protein S6 kinase polypeptide 21q11Rps6ka2 
    361212Rnf44ring finger protein 4417p14Rnf44 
    25742S100bS100 protein, beta polypeptide, neural20p12S100b 
    29521Scamp1secretory carrier membrane protein 12q12Scamp1 
    25545Sepw1selenoprotein W, muscle 11q21Sepw1 
    299114Sdccag1serologically defined colon cancer antigen 11q21Sdccag1 
    78957Shank1SH3/ankyrin domain gene 11q22Shank1 
    171093Shank2SH3/ankyrin domain gene 21q41Shank2 
    24778Slc2a1solute carrier family 2 (facilitated glucose transporter), member 15q36.1Slc2a1 
    305886Slc22a17solute carrier family 22 (organic cation transporter), member 1715p13Slc22a17 
    50622Slc23a2solute carrier family 23 (nucleobase transporters), member 23q36Slc23a2 
    246771Slc25a25solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 253p11Slc25a25 
    Page: 1 2 3 4 5 6 7 8 9 list all