DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
APSTT
Uniprot ID:
Q8WUT4
Source protein:
Leucine-rich repeat neuronal protein 4
Source gene:
LRRN4
Class:
DEG_SPOP_SBC_1
Location:
430:434
E3 ligase:
SPOP
DEGRON score:
0.9498
ASA_SCORE:
50.78
COIL:
0.7796
CONS_SCORE:
0.3964
DSS_SCORE:
0.7006
HELIX:
0.0276
FCONS_SCORE:
0.9975
RIG_SCORE:
0.6049
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S436C
TCGA-D3-A3BZ
SKCM
TCGA
APSTT
DEG_SPOP_SBC_1
0.2778
p.S436C
DO47513
SKCM
ICGC
APSTT
DEG_SPOP_SBC_1
0.2778
p.R426L
TCGA-DJ-A2QB
THCA
TCGA
APSTT
DEG_SPOP_SBC_1
0.2222
p.R426L
DO39421
THCA
ICGC
APSTT
DEG_SPOP_SBC_1
0.2222
p.S436Y
TCGA-DX-A6YV
SARC
TCGA
APSTT
DEG_SPOP_SBC_1
0.2778
p.S436Y
DO220011
SARC
ICGC
APSTT
DEG_SPOP_SBC_1
0.2778
p.T433M
DO222817
BTCA
ICGC
APSTT
DEG_SPOP_SBC_1
0.7423
p.R426W
DO230312
COCA
ICGC
APSTT
DEG_SPOP_SBC_1
0.2222
p.A425T
DO35394
PACA
ICGC
APSTT
DEG_SPOP_SBC_1
0.1944
p.S441N
SIDM00661
B-Cell Non-Hodgkin's Lymphoma
GDSC
APSTT
DEG_SPOP_SBC_1
0.1389
p.S441N
ACH-000914
Lymphoma
CCLE
APSTT
DEG_SPOP_SBC_1
0.1389
p.S441N
HT
haematopoietic_and_lymphoid_tissue
COSMIC
APSTT
DEG_SPOP_SBC_1
0.1389
p.P421L
SIDM00783
Colorectal Carcinoma
GDSC
APSTT
DEG_SPOP_SBC_1
0.0833
p.P421L
ACH-000971
Colon/Colorectal Cancer
CCLE
APSTT
DEG_SPOP_SBC_1
0.0833
p.P421L
HCT-116
large_intestine
COSMIC
APSTT
DEG_SPOP_SBC_1
0.0833
Drug responses associated with LRRN4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of APSTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15226
NF-kappa-B-repressing factor
DEG_SPOP_SBC_1
140:144
APSTT
SPOP
0.8845
More...
O15389
Sialic acid-binding Ig-like lectin 5
DEG_SPOP_SBC_1
538:542
APSTT
SPOP
0.9802
More...
O43150
Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2
DEG_SPOP_SBC_1
778:782
APSTT
SPOP
0.8384
More...
P49765
Vascular endothelial growth factor B
DEG_SPOP_SBC_1
179:183
APSTT
SPOP
0.9197
More...
Q15714
TSC22 domain family protein 1
DEG_SPOP_SBC_1
295:299
APSTT
SPOP
0.9983
More...
Q5SW79
Centrosomal protein of 170 kDa
DEG_SPOP_SBC_1
1332:1336
APSTT
SPOP
0.9016
More...
Q6P1N0
Coiled-coil and C2 domain-containing protein 1A
DEG_SPOP_SBC_1
335:339
APSTT
SPOP
0.9552
More...
Q7Z5P9
Mucin-19
DEG_SPOP_SBC_1
6958:6962
APSTT
SPOP
0.9902
More...
Q7Z5P9
Mucin-19
DEG_SPOP_SBC_1
7577:7581
APSTT
SPOP
0.9928
More...
Q96JG9
Zinc finger protein 469
DEG_SPOP_SBC_1
3488:3492
APSTT
SPOP
0.8928
More...
Q96L14
Cep170-like protein
DEG_SPOP_SBC_1
58:62
APSTT
SPOP
0.9773
More...
Q96M61
Melanoma-associated antigen B18
DEG_SPOP_SBC_1
67:71
APSTT
SPOP
0.9788
More...
Q96RL6
Sialic acid-binding Ig-like lectin 11
DEG_SPOP_SBC_1
662:666
APSTT
SPOP
0.9984
More...
Q9BYB0
SH3 and multiple ankyrin repeat domains protein 3
DEG_SPOP_SBC_1
684:688
APSTT
SPOP
0.9971
More...
Q9H4A9
Dipeptidase 2
DEG_SPOP_SBC_1
59:63
APSTT
SPOP
0.9878
More...
Q9NRR4
Ribonuclease 3
DEG_SPOP_SBC_1
58:62
APSTT
SPOP
0.9364
More...
Q9NRR5
Ubiquilin-4
DEG_SPOP_SBC_1
107:111
APSTT
SPOP
0.9984
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
4594:4598
APSTT
SPOP
0.8747
More...
Q9ULT8
E3 ubiquitin-protein ligase HECTD1
DEG_SPOP_SBC_1
263:267
APSTT
SPOP
0.5944
More...
Q6ZS72
Protein PEAK3
DEG_SPOP_SBC_1
364:368
APSTT
SPOP
0.9503
More...
Q8WUT4
Leucine-rich repeat neuronal protein 4
DEG_SPOP_SBC_1
430:434
APSTT
SPOP
0.9498
More...
Q8N1P7
Beta/gamma crystallin domain-containing protein 2
DEG_SPOP_SBC_1
421:425
APSTT
SPOP
0.9451
More...
Q96FV0
Leucine-rich repeat-containing protein 46
DEG_SPOP_SBC_1
308:312
APSTT
SPOP
0.9867
More...