DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PVTST
Uniprot ID:
Q6PL24
Source protein:
Protein TMED8
Source gene:
TMED8
Class:
DEG_SPOP_SBC_1
Location:
225:229
E3 ligase:
SPOP
DEGRON score:
0.9343
ASA_SCORE:
86.08
COIL:
0.8904
CONS_SCORE:
0.5926
DSS_SCORE:
0.3326
HELIX:
0.0304
FCONS_SCORE:
0.818
RIG_SCORE:
0.8182
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V226A
TCGA-AA-A00N
COAD
TCGA
PVTST
DEG_SPOP_SBC_1
0.5825
p.V226A
DO9876
COAD
ICGC
PVTST
DEG_SPOP_SBC_1
0.5825
p.D230Y
TCGA-D3-A3CE
SKCM
TCGA
PVTST
DEG_SPOP_SBC_1
0.3056
p.D230Y
DO37405
SKCM
ICGC
PVTST
DEG_SPOP_SBC_1
0.3056
p.P225T
TCGA-EE-A20F
SKCM
TCGA
PVTST
DEG_SPOP_SBC_1
0.7031
p.P225T
DO37961
SKCM
ICGC
PVTST
DEG_SPOP_SBC_1
0.7031
p.P225T
SIDM00769
Non-Small Cell Lung Carcinoma
GDSC
PVTST
DEG_SPOP_SBC_1
0.7031
p.P225T
ACH-000733
Lung Cancer
CCLE
PVTST
DEG_SPOP_SBC_1
0.7031
p.P225T
NCI-H1838
lung
COSMIC
PVTST
DEG_SPOP_SBC_1
0.7031
p.G218A
DO228207
LICA
ICGC
PVTST
DEG_SPOP_SBC_1
0.1389
p.S238Y
DO228974
LICA
ICGC
PVTST
DEG_SPOP_SBC_1
0.0833
p.D230E
DO229038
LICA
ICGC
PVTST
DEG_SPOP_SBC_1
0.3056
p.I231T
ACH-000961
Endometrial/Uterine Cancer
CCLE
PVTST
DEG_SPOP_SBC_1
0.2778
Drug responses associated with TMED8 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6NCS4
Homeobox protein Nkx-2.6
DEG_SPOP_SBC_1
5:9
PVTST
SPOP
0.9836
More...
O75553
Disabled homolog 1
DEG_SPOP_SBC_1
504:508
PVTST
SPOP
0.9801
More...
O75554
WW domain-binding protein 4
DEG_SPOP_SBC_1
96:100
PVTST
SPOP
0.9878
More...
P22736
Nuclear receptor subfamily 4 group A member 1
DEG_SPOP_SBC_1
249:253
PVTST
SPOP
0.9805
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
1110:1114
PVTST
SPOP
0.9978
More...
P55197
Protein AF-10
DEG_SPOP_SBC_1
884:888
PVTST
SPOP
0.8239
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2221:2225
PVTST
SPOP
0.7357
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3327:3331
PVTST
SPOP
0.6584
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3625:3629
PVTST
SPOP
0.944
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4058:4062
PVTST
SPOP
0.975
More...
Q13131
5'-AMP-activated protein kinase catalytic subunit alpha-1
DEG_SPOP_SBC_1
450:454
PVTST
SPOP
0.9471
More...
Q6NXT4
Zinc transporter 6
DEG_SPOP_SBC_1
372:376
PVTST
SPOP
0.9593
More...
Q6PL24
Protein TMED8
DEG_SPOP_SBC_1
225:229
PVTST
SPOP
0.9343
More...
Q6UN15
Pre-mRNA 3'-end-processing factor FIP1
DEG_SPOP_SBC_1
203:207
PVTST
SPOP
0.9115
More...
Q7Z7B0
Filamin-A-interacting protein 1
DEG_SPOP_SBC_1
799:803
PVTST
SPOP
0.9685
More...
Q8TAU0
Homeobox protein Nkx-2.3
DEG_SPOP_SBC_1
6:10
PVTST
SPOP
0.9861
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12048:12052
PVTST
SPOP
0.6132
More...
Q99102
Mucin-4
DEG_SPOP_SBC_1
43:47
PVTST
SPOP
0.5365
More...
Q99102
Mucin-4
DEG_SPOP_SBC_1
1490:1494
PVTST
SPOP
0.9531
More...
Q9P2P6
StAR-related lipid transfer protein 9
DEG_SPOP_SBC_1
4244:4248
PVTST
SPOP
0.8399
More...
Q9UHY1
Nuclear receptor-binding protein
DEG_SPOP_SBC_1
33:37
PVTST
SPOP
0.6542
More...
Q9Y520
Protein PRRC2C
DEG_SPOP_SBC_1
2269:2273
PVTST
SPOP
0.9984
More...
Q5TID7
Coiled-coil domain-containing protein 181
DEG_SPOP_SBC_1
328:332
PVTST
SPOP
0.9574
More...
Q8IXQ8
PDZ domain-containing protein 9
DEG_SPOP_SBC_1
131:135
PVTST
SPOP
0.8501
More...