DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
PVTST
Uniprot ID:
Q9Y520
Source protein:
Protein PRRC2C
Source gene:
PRRC2C
Class:
DEG_SPOP_SBC_1
Location:
2269:2273
E3 ligase:
SPOP
DEGRON score:
0.9984
ASA_SCORE:
100.92
COIL:
0.9688
CONS_SCORE:
0.5201
DSS_SCORE:
0.5923
HELIX:
0.0128
FCONS_SCORE:
1.1227
RIG_SCORE:
0.645
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S2268A
TCGA-BS-A0UV
UCEC
TCGA
PVTST
DEG_SPOP_SBC_1
0.3056
p.P2269S
TCGA-EE-A29D
SKCM
TCGA
PVTST
DEG_SPOP_SBC_1
0.6752
p.P2276T
TCGA-EE-A3AC
SKCM
TCGA
PVTST
DEG_SPOP_SBC_1
0.25
p.P2277L
DO233698
GACA
ICGC
PVTST
DEG_SPOP_SBC_1
0.2222
p.R2266S
DO231016
LUSC
ICGC
PVTST
DEG_SPOP_SBC_1
0.3611
p.P2278T
DO37631
SKCM
ICGC
PVTST
DEG_SPOP_SBC_1
0.1944
p.P2271S
DO38123
SKCM
ICGC
PVTST
DEG_SPOP_SBC_1
0.6752
p.S2270A
DO42793
UCEC
ICGC
PVTST
DEG_SPOP_SBC_1
0.7588
p.T2273I
SIDM00144
Non-Small Cell Lung Carcinoma
GDSC
PVTST
DEG_SPOP_SBC_1
0.7078
p.T2273I
ACH-000463
Lung Cancer
CCLE
PVTST
DEG_SPOP_SBC_1
0.7078
p.T2273I
NCI-H460
lung
COSMIC
PVTST
DEG_SPOP_SBC_1
0.7078
p.P2275S
SIDM00444
Esophageal Carcinoma
GDSC
PVTST
DEG_SPOP_SBC_1
0.2778
p.P2275S
ACH-001368
Esophageal Cancer
CCLE
PVTST
DEG_SPOP_SBC_1
0.2778
p.P2275S
OACM5-1
oesophagus
COSMIC
PVTST
DEG_SPOP_SBC_1
0.2778
p.S2260Y
SIDM01611
Endometrial Carcinoma
GDSC
PVTST
DEG_SPOP_SBC_1
0.5278
p.S2260Y
SIDM01588
Endometrial Carcinoma
GDSC
PVTST
DEG_SPOP_SBC_1
0.5278
p.S2260Y
ACH-000993
Endometrial/Uterine Cancer
CCLE
PVTST
DEG_SPOP_SBC_1
0.5278
p.S2260Y
ACH-000996
Endometrial/Uterine Cancer
CCLE
PVTST
DEG_SPOP_SBC_1
0.5278
p.T2275I
NCI-H460
lung
COSMIC
PVTST
DEG_SPOP_SBC_1
0.2778
p.P2277S
OACM5-1
oesophagus
COSMIC
PVTST
DEG_SPOP_SBC_1
0.2222
Drug responses associated with PRRC2C mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6NCS4
Homeobox protein Nkx-2.6
DEG_SPOP_SBC_1
5:9
PVTST
SPOP
0.9836
More...
O75553
Disabled homolog 1
DEG_SPOP_SBC_1
504:508
PVTST
SPOP
0.9801
More...
O75554
WW domain-binding protein 4
DEG_SPOP_SBC_1
96:100
PVTST
SPOP
0.9878
More...
P22736
Nuclear receptor subfamily 4 group A member 1
DEG_SPOP_SBC_1
249:253
PVTST
SPOP
0.9805
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
1110:1114
PVTST
SPOP
0.9978
More...
P55197
Protein AF-10
DEG_SPOP_SBC_1
884:888
PVTST
SPOP
0.8239
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2221:2225
PVTST
SPOP
0.7357
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3327:3331
PVTST
SPOP
0.6584
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3625:3629
PVTST
SPOP
0.944
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4058:4062
PVTST
SPOP
0.975
More...
Q13131
5'-AMP-activated protein kinase catalytic subunit alpha-1
DEG_SPOP_SBC_1
450:454
PVTST
SPOP
0.9471
More...
Q6NXT4
Zinc transporter 6
DEG_SPOP_SBC_1
372:376
PVTST
SPOP
0.9593
More...
Q6PL24
Protein TMED8
DEG_SPOP_SBC_1
225:229
PVTST
SPOP
0.9343
More...
Q6UN15
Pre-mRNA 3'-end-processing factor FIP1
DEG_SPOP_SBC_1
203:207
PVTST
SPOP
0.9115
More...
Q7Z7B0
Filamin-A-interacting protein 1
DEG_SPOP_SBC_1
799:803
PVTST
SPOP
0.9685
More...
Q8TAU0
Homeobox protein Nkx-2.3
DEG_SPOP_SBC_1
6:10
PVTST
SPOP
0.9861
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12048:12052
PVTST
SPOP
0.6132
More...
Q99102
Mucin-4
DEG_SPOP_SBC_1
43:47
PVTST
SPOP
0.5365
More...
Q99102
Mucin-4
DEG_SPOP_SBC_1
1490:1494
PVTST
SPOP
0.9531
More...
Q9P2P6
StAR-related lipid transfer protein 9
DEG_SPOP_SBC_1
4244:4248
PVTST
SPOP
0.8399
More...
Q9UHY1
Nuclear receptor-binding protein
DEG_SPOP_SBC_1
33:37
PVTST
SPOP
0.6542
More...
Q9Y520
Protein PRRC2C
DEG_SPOP_SBC_1
2269:2273
PVTST
SPOP
0.9984
More...
Q5TID7
Coiled-coil domain-containing protein 181
DEG_SPOP_SBC_1
328:332
PVTST
SPOP
0.9574
More...
Q8IXQ8
PDZ domain-containing protein 9
DEG_SPOP_SBC_1
131:135
PVTST
SPOP
0.8501
More...