DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PVTST
Uniprot ID:
Q8TAU0
Source protein:
Homeobox protein Nkx-2.3
Source gene:
NKX2-3
Class:
DEG_SPOP_SBC_1
Location:
6:10
E3 ligase:
SPOP
DEGRON score:
0.9861
ASA_SCORE:
78.74
COIL:
0.909
CONS_SCORE:
0.5852
DSS_SCORE:
0.5136
HELIX:
0.0144
FCONS_SCORE:
0.9748
RIG_SCORE:
0.6967
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T10I
TCGA-24-1471
OV
TCGA
PVTST
DEG_SPOP_SBC_1
0.7078
p.T10I
TCGA-F5-6814
READ
TCGA
PVTST
DEG_SPOP_SBC_1
0.7078
p.T10I
DO31090
OV
ICGC
PVTST
DEG_SPOP_SBC_1
0.7078
p.T10I
DO36556
READ
ICGC
PVTST
DEG_SPOP_SBC_1
0.7078
p.T10I
SIDM00516
Melanoma
GDSC
PVTST
DEG_SPOP_SBC_1
0.7078
p.T10I
ACH-002166
Skin Cancer
CCLE
PVTST
DEG_SPOP_SBC_1
0.7078
p.T10I
MZ7-mel
skin
COSMIC
PVTST
DEG_SPOP_SBC_1
0.7078
p.D16Y
TCGA-A5-A2K5
UCEC
TCGA
PVTST
DEG_SPOP_SBC_1
0.1667
p.D16Y
DO41379
UCEC
ICGC
PVTST
DEG_SPOP_SBC_1
0.1667
p.S5N
TCGA-EA-A410
CESC
TCGA
PVTST
DEG_SPOP_SBC_1
0.4167
p.S5N
DO49929
CESC
ICGC
PVTST
DEG_SPOP_SBC_1
0.4167
p.P4T
DO232224
PBCA
ICGC
PVTST
DEG_SPOP_SBC_1
0.2778
p.N19S
ACH-001991
Primary
CCLE
PVTST
DEG_SPOP_SBC_1
0.0833
Drug responses associated with NKX2-3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6NCS4
Homeobox protein Nkx-2.6
DEG_SPOP_SBC_1
5:9
PVTST
SPOP
0.9836
More...
O75553
Disabled homolog 1
DEG_SPOP_SBC_1
504:508
PVTST
SPOP
0.9801
More...
O75554
WW domain-binding protein 4
DEG_SPOP_SBC_1
96:100
PVTST
SPOP
0.9878
More...
P22736
Nuclear receptor subfamily 4 group A member 1
DEG_SPOP_SBC_1
249:253
PVTST
SPOP
0.9805
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
1110:1114
PVTST
SPOP
0.9978
More...
P55197
Protein AF-10
DEG_SPOP_SBC_1
884:888
PVTST
SPOP
0.8239
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2221:2225
PVTST
SPOP
0.7357
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3327:3331
PVTST
SPOP
0.6584
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3625:3629
PVTST
SPOP
0.944
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4058:4062
PVTST
SPOP
0.975
More...
Q13131
5'-AMP-activated protein kinase catalytic subunit alpha-1
DEG_SPOP_SBC_1
450:454
PVTST
SPOP
0.9471
More...
Q6NXT4
Zinc transporter 6
DEG_SPOP_SBC_1
372:376
PVTST
SPOP
0.9593
More...
Q6PL24
Protein TMED8
DEG_SPOP_SBC_1
225:229
PVTST
SPOP
0.9343
More...
Q6UN15
Pre-mRNA 3'-end-processing factor FIP1
DEG_SPOP_SBC_1
203:207
PVTST
SPOP
0.9115
More...
Q7Z7B0
Filamin-A-interacting protein 1
DEG_SPOP_SBC_1
799:803
PVTST
SPOP
0.9685
More...
Q8TAU0
Homeobox protein Nkx-2.3
DEG_SPOP_SBC_1
6:10
PVTST
SPOP
0.9861
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12048:12052
PVTST
SPOP
0.6132
More...
Q99102
Mucin-4
DEG_SPOP_SBC_1
43:47
PVTST
SPOP
0.5365
More...
Q99102
Mucin-4
DEG_SPOP_SBC_1
1490:1494
PVTST
SPOP
0.9531
More...
Q9P2P6
StAR-related lipid transfer protein 9
DEG_SPOP_SBC_1
4244:4248
PVTST
SPOP
0.8399
More...
Q9UHY1
Nuclear receptor-binding protein
DEG_SPOP_SBC_1
33:37
PVTST
SPOP
0.6542
More...
Q9Y520
Protein PRRC2C
DEG_SPOP_SBC_1
2269:2273
PVTST
SPOP
0.9984
More...
Q5TID7
Coiled-coil domain-containing protein 181
DEG_SPOP_SBC_1
328:332
PVTST
SPOP
0.9574
More...
Q8IXQ8
PDZ domain-containing protein 9
DEG_SPOP_SBC_1
131:135
PVTST
SPOP
0.8501
More...