DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PVTST
Uniprot ID:
Q8IXQ8
Source protein:
PDZ domain-containing protein 9
Source gene:
PDZD9
Class:
DEG_SPOP_SBC_1
Location:
131:135
E3 ligase:
SPOP
DEGRON score:
0.8501
ASA_SCORE:
87.78
COIL:
0.9534
CONS_SCORE:
0.7408
DSS_SCORE:
0.2791
HELIX:
0.0186
FCONS_SCORE:
0.9916
RIG_SCORE:
0.7629
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.I122T
TCGA-22-4604
LUSC
TCGA
PVTST
DEG_SPOP_SBC_1
0.0833
p.I122T
DO26922
LUSC
ICGC
PVTST
DEG_SPOP_SBC_1
0.0833
p.D141Y
TCGA-EI-6917
READ
TCGA
PVTST
DEG_SPOP_SBC_1
0.1667
p.D141Y
DO36881
READ
ICGC
PVTST
DEG_SPOP_SBC_1
0.1667
p.S121C
TCGA-L5-A43E
ESCA
TCGA
PVTST
DEG_SPOP_SBC_1
0.0556
p.G139E
TCGA-OD-A75X
SKCM
TCGA
PVTST
DEG_SPOP_SBC_1
0.2222
p.G139E
DO48601
SKCM
ICGC
PVTST
DEG_SPOP_SBC_1
0.2222
p.D141G
TCGA-XR-A8TG
LIHC
TCGA
PVTST
DEG_SPOP_SBC_1
0.1667
p.D141G
DO223040
ESCA
ICGC
PVTST
DEG_SPOP_SBC_1
0.1667
p.D141G
DO223924
LIHC
ICGC
PVTST
DEG_SPOP_SBC_1
0.1667
p.G128E
DO234406
ESAD
ICGC
PVTST
DEG_SPOP_SBC_1
0.25
p.H127N
DO229009
LICA
ICGC
PVTST
DEG_SPOP_SBC_1
0.2222
p.Y129C
SIDM00779
Colorectal Carcinoma
GDSC
PVTST
DEG_SPOP_SBC_1
0.2778
p.Y129C
NCI-H716
large_intestine
COSMIC
PVTST
DEG_SPOP_SBC_1
0.2778
Drug responses associated with PDZD9 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6NCS4
Homeobox protein Nkx-2.6
DEG_SPOP_SBC_1
5:9
PVTST
SPOP
0.9836
More...
O75553
Disabled homolog 1
DEG_SPOP_SBC_1
504:508
PVTST
SPOP
0.9801
More...
O75554
WW domain-binding protein 4
DEG_SPOP_SBC_1
96:100
PVTST
SPOP
0.9878
More...
P22736
Nuclear receptor subfamily 4 group A member 1
DEG_SPOP_SBC_1
249:253
PVTST
SPOP
0.9805
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
1110:1114
PVTST
SPOP
0.9978
More...
P55197
Protein AF-10
DEG_SPOP_SBC_1
884:888
PVTST
SPOP
0.8239
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2221:2225
PVTST
SPOP
0.7357
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3327:3331
PVTST
SPOP
0.6584
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3625:3629
PVTST
SPOP
0.944
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4058:4062
PVTST
SPOP
0.975
More...
Q13131
5'-AMP-activated protein kinase catalytic subunit alpha-1
DEG_SPOP_SBC_1
450:454
PVTST
SPOP
0.9471
More...
Q6NXT4
Zinc transporter 6
DEG_SPOP_SBC_1
372:376
PVTST
SPOP
0.9593
More...
Q6PL24
Protein TMED8
DEG_SPOP_SBC_1
225:229
PVTST
SPOP
0.9343
More...
Q6UN15
Pre-mRNA 3'-end-processing factor FIP1
DEG_SPOP_SBC_1
203:207
PVTST
SPOP
0.9115
More...
Q7Z7B0
Filamin-A-interacting protein 1
DEG_SPOP_SBC_1
799:803
PVTST
SPOP
0.9685
More...
Q8TAU0
Homeobox protein Nkx-2.3
DEG_SPOP_SBC_1
6:10
PVTST
SPOP
0.9861
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12048:12052
PVTST
SPOP
0.6132
More...
Q99102
Mucin-4
DEG_SPOP_SBC_1
43:47
PVTST
SPOP
0.5365
More...
Q99102
Mucin-4
DEG_SPOP_SBC_1
1490:1494
PVTST
SPOP
0.9531
More...
Q9P2P6
StAR-related lipid transfer protein 9
DEG_SPOP_SBC_1
4244:4248
PVTST
SPOP
0.8399
More...
Q9UHY1
Nuclear receptor-binding protein
DEG_SPOP_SBC_1
33:37
PVTST
SPOP
0.6542
More...
Q9Y520
Protein PRRC2C
DEG_SPOP_SBC_1
2269:2273
PVTST
SPOP
0.9984
More...
Q5TID7
Coiled-coil domain-containing protein 181
DEG_SPOP_SBC_1
328:332
PVTST
SPOP
0.9574
More...
Q8IXQ8
PDZ domain-containing protein 9
DEG_SPOP_SBC_1
131:135
PVTST
SPOP
0.8501
More...