DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
AATTT
Uniprot ID:
Q5PRF9
Source protein:
Protein Smaug homolog 2
Source gene:
SAMD4B
Class:
DEG_SPOP_SBC_1
Location:
403:407
E3 ligase:
SPOP
DEGRON score:
0.9499
ASA_SCORE:
83.3
COIL:
0.7586
CONS_SCORE:
0.1808
DSS_SCORE:
0.4339
HELIX:
0.2304
FCONS_SCORE:
0.7572
RIG_SCORE:
0.7222
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V396I
TCGA-85-A4QR
LUSC
TCGA
AATTT
DEG_SPOP_SBC_1
0.1389
p.V396I
DO45523
LUSC
ICGC
AATTT
DEG_SPOP_SBC_1
0.1389
p.T405A
TCGA-AO-A128
BRCA
TCGA
AATTT
DEG_SPOP_SBC_1
0.825
p.T405A
DO5326
BRCA
ICGC
AATTT
DEG_SPOP_SBC_1
0.825
p.A404T
TCGA-CD-A4MI
STAD
TCGA
AATTT
DEG_SPOP_SBC_1
0.6028
p.A404T
DO227731
COCA
ICGC
AATTT
DEG_SPOP_SBC_1
0.6028
p.A404T
DO47717
STAD
ICGC
AATTT
DEG_SPOP_SBC_1
0.6028
p.G416V
TCGA-G2-A2EJ
BLCA
TCGA
AATTT
DEG_SPOP_SBC_1
0.0833
p.G416V
DO554
BLCA
ICGC
AATTT
DEG_SPOP_SBC_1
0.0833
p.A410S
DO229019
LICA
ICGC
AATTT
DEG_SPOP_SBC_1
0.25
p.A393S
DO229028
LICA
ICGC
AATTT
DEG_SPOP_SBC_1
0.0556
p.K411R
SIDM00670
Pancreatic Carcinoma
GDSC
AATTT
DEG_SPOP_SBC_1
0.3333
p.K411R
ACH-000270
Pancreatic Cancer
CCLE
AATTT
DEG_SPOP_SBC_1
0.3333
p.K411R
ACH-001098
Pancreatic Cancer
CCLE
AATTT
DEG_SPOP_SBC_1
0.3333
p.K411R
HPAC
pancreas
COSMIC
AATTT
DEG_SPOP_SBC_1
0.3333
Drug responses associated with SAMD4B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of AATTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60641
Clathrin coat assembly protein AP180
DEG_SPOP_SBC_1
542:546
AATTT
SPOP
0.611
More...
O60907
F-box-like/WD repeat-containing protein TBL1X
DEG_SPOP_SBC_1
174:178
AATTT
SPOP
0.6842
More...
P35658
Nuclear pore complex protein Nup214
DEG_SPOP_SBC_1
1824:1828
AATTT
SPOP
0.6214
More...
P55318
Hepatocyte nuclear factor 3-gamma
DEG_SPOP_SBC_1
226:230
AATTT
SPOP
0.9972
More...
Q5PRF9
Protein Smaug homolog 2
DEG_SPOP_SBC_1
403:407
AATTT
SPOP
0.9499
More...
Q6ZRS2
Helicase SRCAP
DEG_SPOP_SBC_1
1143:1147
AATTT
SPOP
0.8846
More...
Q86Z02
Homeodomain-interacting protein kinase 1
DEG_SPOP_SBC_1
156:160
AATTT
SPOP
0.6639
More...
Q8IYB3
Serine/arginine repetitive matrix protein 1
DEG_SPOP_SBC_1
852:856
AATTT
SPOP
0.9784
More...
Q8IZL2
Mastermind-like protein 2
DEG_SPOP_SBC_1
99:103
AATTT
SPOP
0.8339
More...
Q8WY41
Nanos homolog 1
DEG_SPOP_SBC_1
172:176
AATTT
SPOP
0.8881
More...
Q96N19
Integral membrane protein GPR137
DEG_SPOP_SBC_1
349:353
AATTT
SPOP
0.882
More...
Q9H4A3
Serine/threonine-protein kinase WNK1
DEG_SPOP_SBC_1
69:73
AATTT
SPOP
0.9948
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2999:3003
AATTT
SPOP
0.9608
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3141:3145
AATTT
SPOP
0.995
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4398:4402
AATTT
SPOP
0.999
More...
Q9HCJ2
Leucine-rich repeat-containing protein 4C
DEG_SPOP_SBC_1
445:449
AATTT
SPOP
0.8689
More...
Q9UKB5
Adherens junction-associated protein 1
DEG_SPOP_SBC_1
217:221
AATTT
SPOP
0.9943
More...
Q8N3X1
Formin-binding protein 4
DEG_SPOP_SBC_1
53:57
AATTT
SPOP
0.704
More...