DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
PVSTT
Uniprot ID:
Q96RL7
Source protein:
Intermembrane lipid transfer protein VPS13A
Source gene:
VPS13A
Class:
DEG_SPOP_SBC_1
Location:
1023:1027
E3 ligase:
SPOP
DEGRON score:
0.8888
ASA_SCORE:
83.98
COIL:
0.9316
CONS_SCORE:
0.206
DSS_SCORE:
0.609
HELIX:
0.0344
FCONS_SCORE:
0.8873
RIG_SCORE:
0.6656
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P1015L
TCGA-B5-A11E
UCEC
TCGA
PVSTT
DEG_SPOP_SBC_1
0.1111
p.P1015L
DO41644
UCEC
ICGC
PVSTT
DEG_SPOP_SBC_1
0.1111
p.K1037E
TCGA-F1-6874
STAD
TCGA
PVSTT
DEG_SPOP_SBC_1
0.1667
p.K1037E
DO38201
STAD
ICGC
PVSTT
DEG_SPOP_SBC_1
0.1667
p.E1030K
DO222908
MELA
ICGC
PVSTT
DEG_SPOP_SBC_1
0.25
p.S1021L
DO219878
SKCA
ICGC
PVSTT
DEG_SPOP_SBC_1
0.2778
p.I1036V
DO229242
THCA
ICGC
PVSTT
DEG_SPOP_SBC_1
0.0833
p.E1028G
SIDM00128
Head and Neck Carcinoma
GDSC
PVSTT
DEG_SPOP_SBC_1
0.3056
p.E1028G
SIDM00481
Ovarian Carcinoma
GDSC
PVSTT
DEG_SPOP_SBC_1
0.3056
p.E1028G
SIDM00520
Mesothelioma
GDSC
PVSTT
DEG_SPOP_SBC_1
0.3056
p.E1028G
SIDM00335
Endometrial Carcinoma
GDSC
PVSTT
DEG_SPOP_SBC_1
0.3056
p.E1028G
SIDM01750
Melanoma
GDSC
PVSTT
DEG_SPOP_SBC_1
0.3056
Drug responses associated with VPS13A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVSTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q685J3
Mucin-17
DEG_SPOP_SBC_1
458:462
PVSTT
SPOP
0.8219
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
1166:1170
PVSTT
SPOP
0.615
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
1284:1288
PVSTT
SPOP
0.7705
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
1402:1406
PVSTT
SPOP
0.678
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
1755:1759
PVSTT
SPOP
0.7406
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
1932:1936
PVSTT
SPOP
0.9647
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
2050:2054
PVSTT
SPOP
0.8263
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
2167:2171
PVSTT
SPOP
0.6746
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
2344:2348
PVSTT
SPOP
0.9456
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
2462:2466
PVSTT
SPOP
0.5519
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
2521:2525
PVSTT
SPOP
0.799
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
3052:3056
PVSTT
SPOP
0.791
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
3111:3115
PVSTT
SPOP
0.5181
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
3287:3291
PVSTT
SPOP
0.9282
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
3523:3527
PVSTT
SPOP
0.8654
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
3641:3645
PVSTT
SPOP
0.6776
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
3700:3704
PVSTT
SPOP
0.7947
More...
Q6P4R8
Nuclear factor related to kappa-B-binding protein
DEG_SPOP_SBC_1
1166:1170
PVSTT
SPOP
0.9956
More...
Q6ZSZ6
Teashirt homolog 1
DEG_SPOP_SBC_1
164:168
PVSTT
SPOP
0.8971
More...
Q8IWK6
Adhesion G protein-coupled receptor A3
DEG_SPOP_SBC_1
1256:1260
PVSTT
SPOP
0.997
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7701:7705
PVSTT
SPOP
0.9414
More...
Q96RL7
Intermembrane lipid transfer protein VPS13A
DEG_SPOP_SBC_1
1023:1027
PVSTT
SPOP
0.8888
More...
Q99700
Ataxin-2
DEG_SPOP_SBC_1
1290:1294
PVSTT
SPOP
0.9197
More...
Q9H4A3
Serine/threonine-protein kinase WNK1
DEG_SPOP_SBC_1
1737:1741
PVSTT
SPOP
0.9631
More...
O15034
RIMS-binding protein 2
DEG_SPOP_SBC_1
663:667
PVSTT
SPOP
0.6642
More...
Q9P206
Uncharacterized protein KIAA1522
DEG_SPOP_SBC_1
637:641
PVSTT
SPOP
0.942
More...