DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PVTSS
Uniprot ID:
Q13029
Source protein:
PR domain zinc finger protein 2
Source gene:
PRDM2
Class:
DEG_SPOP_SBC_1
Location:
727:731
E3 ligase:
SPOP
DEGRON score:
0.9999
ASA_SCORE:
78.66
COIL:
0.8602
CONS_SCORE:
0.4867
DSS_SCORE:
0.4968
HELIX:
0.077
FCONS_SCORE:
1.2149
RIG_SCORE:
0.7147
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S720Y
TCGA-A5-A0G2
UCEC
TCGA
PVTSS
DEG_SPOP_SBC_1
0.5833
p.P741S
TCGA-DQ-7596
HNSC
TCGA
PVTSS
DEG_SPOP_SBC_1
0.0556
p.T737I
TCGA-KQ-A41O
BLCA
TCGA
PVTSS
DEG_SPOP_SBC_1
0.6111
p.T737I
SIDM00140
Melanoma
GDSC
PVTSS
DEG_SPOP_SBC_1
0.6111
p.T737I
ACH-000968
Skin Cancer
CCLE
PVTSS
DEG_SPOP_SBC_1
0.6111
p.T737I
COLO-792
skin
COSMIC
PVTSS
DEG_SPOP_SBC_1
0.6111
p.A723E
TCGA-QR-A7IP
PCPG
TCGA
PVTSS
DEG_SPOP_SBC_1
0.2222
p.M725V
TCGA-YZ-A984
UVM
TCGA
PVTSS
DEG_SPOP_SBC_1
0.2778
p.P728L
DO51734
COAD
ICGC
PVTSS
DEG_SPOP_SBC_1
0.7582
p.P728L
DO42568
UCEC
ICGC
PVTSS
DEG_SPOP_SBC_1
0.7582
p.S720P
DO50894
LICA
ICGC
PVTSS
DEG_SPOP_SBC_1
0.5833
p.S720P
SIDM01413
Oral Cavity Carcinoma
GDSC
PVTSS
DEG_SPOP_SBC_1
0.5833
p.S720P
ACH-000630
Head and Neck Cancer
CCLE
PVTSS
DEG_SPOP_SBC_1
0.5833
p.A721V
DO228322
MALY
ICGC
PVTSS
DEG_SPOP_SBC_1
0.1667
p.S731G
DO229065
PRAD
ICGC
PVTSS
DEG_SPOP_SBC_1
0.6993
p.T736A
DO43634
UCEC
ICGC
PVTSS
DEG_SPOP_SBC_1
0.1944
p.S739F
SIDM00562
Breast Carcinoma
GDSC
PVTSS
DEG_SPOP_SBC_1
0.5556
p.S739F
ACH-002163
Breast Cancer
CCLE
PVTSS
DEG_SPOP_SBC_1
0.5556
p.S739F
MRK-nu-1
breast
COSMIC
PVTSS
DEG_SPOP_SBC_1
0.5556
p.S730C
IST-SL2
lung
COSMIC
PVTSS
DEG_SPOP_SBC_1
0.7541
Drug responses associated with PRDM2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A0AVK6
Transcription factor E2F8
DEG_SPOP_SBC_1
679:683
PVTSS
SPOP
0.7433
More...
O15018
PDZ domain-containing protein 2
DEG_SPOP_SBC_1
2252:2256
PVTSS
SPOP
0.9947
More...
O43670
BUB3-interacting and GLEBS motif-containing protein ZNF207
DEG_SPOP_SBC_1
264:268
PVTSS
SPOP
0.9888
More...
P35658
Nuclear pore complex protein Nup214
DEG_SPOP_SBC_1
1387:1391
PVTSS
SPOP
0.9755
More...
Q01543
Friend leukemia integration 1 transcription factor
DEG_SPOP_SBC_1
409:413
PVTSS
SPOP
0.9612
More...
Q12948
Forkhead box protein C1
DEG_SPOP_SBC_1
435:439
PVTSS
SPOP
0.9931
More...
Q13029
PR domain zinc finger protein 2
DEG_SPOP_SBC_1
727:731
PVTSS
SPOP
0.9999
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
3945:3949
PVTSS
SPOP
0.9405
More...
Q7Z6E9
E3 ubiquitin-protein ligase RBBP6
DEG_SPOP_SBC_1
372:376
PVTSS
SPOP
0.9626
More...
Q8NHV4
Protein NEDD1
DEG_SPOP_SBC_1
449:453
PVTSS
SPOP
0.9326
More...
Q8WWM7
Ataxin-2-like protein
DEG_SPOP_SBC_1
479:483
PVTSS
SPOP
0.9957
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
5089:5093
PVTSS
SPOP
0.9713
More...
Q9H4E7
Differentially expressed in FDCP 6 homolog
DEG_SPOP_SBC_1
561:565
PVTSS
SPOP
0.9921
More...
Q9H792
Inactive tyrosine-protein kinase PEAK1
DEG_SPOP_SBC_1
508:512
PVTSS
SPOP
0.9914
More...
Q9Y253
DNA polymerase eta
DEG_SPOP_SBC_1
455:459
PVTSS
SPOP
0.7281
More...
Q9Y458
T-box transcription factor TBX22
DEG_SPOP_SBC_1
324:328
PVTSS
SPOP
0.753
More...
Q2VYF4
LETM1 domain-containing protein LETM2, mitochondrial
DEG_SPOP_SBC_1
446:450
PVTSS
SPOP
0.9775
More...
Q8ND82
Zinc finger protein 280C
DEG_SPOP_SBC_1
211:215
PVTSS
SPOP
0.805
More...
Q9BZI1
Iroquois-class homeodomain protein IRX-2
DEG_SPOP_SBC_1
282:286
PVTSS
SPOP
0.9926
More...
Q3LI83
Keratin-associated protein 24-1
DEG_SPOP_SBC_1
27:31
PVTSS
SPOP
0.9114
More...
Q2M243
Coiled-coil domain-containing protein 27
DEG_SPOP_SBC_1
211:215
PVTSS
SPOP
0.6822
More...
Q8NCT3
Uncharacterized protein KIAA0895
DEG_SPOP_SBC_1
157:161
PVTSS
SPOP
0.9394
More...