DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VSSST
Uniprot ID:
O60237
Source protein:
Protein phosphatase 1 regulatory subunit 12B
Source gene:
PPP1R12B
Class:
DEG_SPOP_SBC_1
Location:
574:578
E3 ligase:
SPOP
DEGRON score:
0.9726
ASA_SCORE:
83.3
COIL:
0.932
CONS_SCORE:
0.3637
DSS_SCORE:
0.4555
HELIX:
0.0378
FCONS_SCORE:
0.9955
RIG_SCORE:
0.7082
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T566I
TCGA-12-1089
GBM
TCGA
VSSST
DEG_SPOP_SBC_1
0.1111
p.T566I
DO12346
GBM
ICGC
VSSST
DEG_SPOP_SBC_1
0.1111
p.L588F
TCGA-55-7911
LUAD
TCGA
VSSST
DEG_SPOP_SBC_1
0.0556
p.L588F
TCGA-DS-A0VM
CESC
TCGA
VSSST
DEG_SPOP_SBC_1
0.0556
p.L588F
DO6258
CESC
ICGC
VSSST
DEG_SPOP_SBC_1
0.0556
p.L588F
DO24821
LUAD
ICGC
VSSST
DEG_SPOP_SBC_1
0.0556
p.R586H
TCGA-AA-3842
COAD
TCGA
VSSST
DEG_SPOP_SBC_1
0.1111
p.R586H
TCGA-BR-4184
STAD
TCGA
VSSST
DEG_SPOP_SBC_1
0.1111
p.R586H
DO9394
COAD
ICGC
VSSST
DEG_SPOP_SBC_1
0.1111
p.R586H
DO38328
STAD
ICGC
VSSST
DEG_SPOP_SBC_1
0.1111
p.E568D
TCGA-AP-A0LM
UCEC
TCGA
VSSST
DEG_SPOP_SBC_1
0.1667
p.E568D
DO43306
UCEC
ICGC
VSSST
DEG_SPOP_SBC_1
0.1667
p.P579Q
TCGA-AP-A1DR
UCEC
TCGA
VSSST
DEG_SPOP_SBC_1
0.3056
p.P579Q
DO43747
UCEC
ICGC
VSSST
DEG_SPOP_SBC_1
0.3056
p.D564N
TCGA-BR-8680
STAD
TCGA
VSSST
DEG_SPOP_SBC_1
0.0556
p.D564N
DO233884
GACA
ICGC
VSSST
DEG_SPOP_SBC_1
0.0556
p.D564N
DO47769
STAD
ICGC
VSSST
DEG_SPOP_SBC_1
0.0556
p.S571L
SIDM00392
Melanoma
GDSC
VSSST
DEG_SPOP_SBC_1
0.25
p.S571L
SK-MEL-30
skin
COSMIC
VSSST
DEG_SPOP_SBC_1
0.25
p.T566P
SIDM00442
Thyroid Gland Carcinoma
GDSC
VSSST
DEG_SPOP_SBC_1
0.1111
p.T566P
ML-1
thyroid
COSMIC
VSSST
DEG_SPOP_SBC_1
0.1111
p.P578S
SIDM00210
Ovarian Carcinoma
GDSC
VSSST
DEG_SPOP_SBC_1
0.6752
p.P578S
A2780
ovary
COSMIC
VSSST
DEG_SPOP_SBC_1
0.6752
p.P579T
ACH-000631
Brain Cancer
CCLE
VSSST
DEG_SPOP_SBC_1
0.3056
p.P579T
KS-1
central_nervous_system
COSMIC
VSSST
DEG_SPOP_SBC_1
0.3056
p.D572Y
ACH-000789
Lung Cancer
CCLE
VSSST
DEG_SPOP_SBC_1
0.2778
p.D572Y
NCI-H810
lung
COSMIC
VSSST
DEG_SPOP_SBC_1
0.2778
p.D564G
ACH-000994
Endometrial/Uterine Cancer
CCLE
VSSST
DEG_SPOP_SBC_1
0.0556
p.C581Y
ACH-000999
Colon/Colorectal Cancer
CCLE
VSSST
DEG_SPOP_SBC_1
0.25
p.C581Y
SNU-1040
large_intestine
COSMIC
VSSST
DEG_SPOP_SBC_1
0.25
Drug responses associated with PPP1R12B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60237
Protein phosphatase 1 regulatory subunit 12B
DEG_SPOP_SBC_1
574:578
VSSST
SPOP
0.9726
More...
O75179
Ankyrin repeat domain-containing protein 17
DEG_SPOP_SBC_1
2573:2577
VSSST
SPOP
0.768
More...
O75496
Geminin
DEG_SPOP_SBC_1
199:203
VSSST
SPOP
0.9991
More...
O95935
T-box transcription factor TBX18
DEG_SPOP_SBC_1
460:464
VSSST
SPOP
0.9891
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1797:1801
VSSST
SPOP
0.9347
More...
Q12951
Forkhead box protein I1
DEG_SPOP_SBC_1
222:226
VSSST
SPOP
0.9895
More...
Q13433
Zinc transporter ZIP6
DEG_SPOP_SBC_1
218:222
VSSST
SPOP
0.9963
More...
Q13516
Oligodendrocyte transcription factor 2
DEG_SPOP_SBC_1
39:43
VSSST
SPOP
0.9992
More...
Q2LD37
Transmembrane protein KIAA1109
DEG_SPOP_SBC_1
4029:4033
VSSST
SPOP
0.5866
More...
Q5CZC0
Fibrous sheath-interacting protein 2
DEG_SPOP_SBC_1
5734:5738
VSSST
SPOP
0.9977
More...
Q5T4S7
E3 ubiquitin-protein ligase UBR4
DEG_SPOP_SBC_1
2933:2937
VSSST
SPOP
0.996
More...
Q5T6F2
Ubiquitin-associated protein 2
DEG_SPOP_SBC_1
1005:1009
VSSST
SPOP
0.9988
More...
Q8NEZ2
Vacuolar protein sorting-associated protein 37A
DEG_SPOP_SBC_1
179:183
VSSST
SPOP
0.9741
More...
Q8WWM7
Ataxin-2-like protein
DEG_SPOP_SBC_1
835:839
VSSST
SPOP
0.9941
More...
Q96IZ0
PRKC apoptosis WT1 regulator protein
DEG_SPOP_SBC_1
263:267
VSSST
SPOP
0.7604
More...
Q9P1A6
Disks large-associated protein 2
DEG_SPOP_SBC_1
155:159
VSSST
SPOP
0.9548
More...
Q9UJT9
F-box/LRR-repeat protein 7
DEG_SPOP_SBC_1
23:27
VSSST
SPOP
0.9977
More...
Q9Y6Q9
Nuclear receptor coactivator 3
DEG_SPOP_SBC_1
659:663
VSSST
SPOP
0.9709
More...
Q9H195
Mucin-3B
DEG_SPOP_SBC_1
365:369
VSSST
SPOP
0.9057
More...