DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VSSST
Uniprot ID:
Q8NEZ2
Source protein:
Vacuolar protein sorting-associated protein 37A
Source gene:
VPS37A
Class:
DEG_SPOP_SBC_1
Location:
179:183
E3 ligase:
SPOP
DEGRON score:
0.9741
ASA_SCORE:
84.16
COIL:
0.9628
CONS_SCORE:
0.3184
DSS_SCORE:
0.4664
HELIX:
0.0208
FCONS_SCORE:
0.9412
RIG_SCORE:
0.6216
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L173F
TCGA-78-7158
LUAD
TCGA
VSSST
DEG_SPOP_SBC_1
0.1667
p.V179L
TCGA-B5-A3FA
UCEC
TCGA
VSSST
DEG_SPOP_SBC_1
0.6765
p.P191S
TCGA-D3-A51G
SKCM
TCGA
VSSST
DEG_SPOP_SBC_1
0.1111
p.I170S
TCGA-IB-7651
PAAD
TCGA
VSSST
DEG_SPOP_SBC_1
0.0833
p.P191R
TCGA-R6-A6Y2
ESCA
TCGA
VSSST
DEG_SPOP_SBC_1
0.1111
p.D185H
DO218986
BLCA
ICGC
VSSST
DEG_SPOP_SBC_1
0.2778
p.D185N
DO233694
GACA
ICGC
VSSST
DEG_SPOP_SBC_1
0.2778
p.P189L
DO37583
SKCM
ICGC
VSSST
DEG_SPOP_SBC_1
0.1667
p.P189S
DO37583
SKCM
ICGC
VSSST
DEG_SPOP_SBC_1
0.1667
p.S170L
DO37432
SKCM
ICGC
VSSST
DEG_SPOP_SBC_1
0.0833
p.S170L
DO51301
SKCM
ICGC
VSSST
DEG_SPOP_SBC_1
0.0833
p.A189G
ACH-001394
Breast Cancer
CCLE
VSSST
DEG_SPOP_SBC_1
0.1667
Drug responses associated with VPS37A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60237
Protein phosphatase 1 regulatory subunit 12B
DEG_SPOP_SBC_1
574:578
VSSST
SPOP
0.9726
More...
O75179
Ankyrin repeat domain-containing protein 17
DEG_SPOP_SBC_1
2573:2577
VSSST
SPOP
0.768
More...
O75496
Geminin
DEG_SPOP_SBC_1
199:203
VSSST
SPOP
0.9991
More...
O95935
T-box transcription factor TBX18
DEG_SPOP_SBC_1
460:464
VSSST
SPOP
0.9891
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1797:1801
VSSST
SPOP
0.9347
More...
Q12951
Forkhead box protein I1
DEG_SPOP_SBC_1
222:226
VSSST
SPOP
0.9895
More...
Q13433
Zinc transporter ZIP6
DEG_SPOP_SBC_1
218:222
VSSST
SPOP
0.9963
More...
Q13516
Oligodendrocyte transcription factor 2
DEG_SPOP_SBC_1
39:43
VSSST
SPOP
0.9992
More...
Q2LD37
Transmembrane protein KIAA1109
DEG_SPOP_SBC_1
4029:4033
VSSST
SPOP
0.5866
More...
Q5CZC0
Fibrous sheath-interacting protein 2
DEG_SPOP_SBC_1
5734:5738
VSSST
SPOP
0.9977
More...
Q5T4S7
E3 ubiquitin-protein ligase UBR4
DEG_SPOP_SBC_1
2933:2937
VSSST
SPOP
0.996
More...
Q5T6F2
Ubiquitin-associated protein 2
DEG_SPOP_SBC_1
1005:1009
VSSST
SPOP
0.9988
More...
Q8NEZ2
Vacuolar protein sorting-associated protein 37A
DEG_SPOP_SBC_1
179:183
VSSST
SPOP
0.9741
More...
Q8WWM7
Ataxin-2-like protein
DEG_SPOP_SBC_1
835:839
VSSST
SPOP
0.9941
More...
Q96IZ0
PRKC apoptosis WT1 regulator protein
DEG_SPOP_SBC_1
263:267
VSSST
SPOP
0.7604
More...
Q9P1A6
Disks large-associated protein 2
DEG_SPOP_SBC_1
155:159
VSSST
SPOP
0.9548
More...
Q9UJT9
F-box/LRR-repeat protein 7
DEG_SPOP_SBC_1
23:27
VSSST
SPOP
0.9977
More...
Q9Y6Q9
Nuclear receptor coactivator 3
DEG_SPOP_SBC_1
659:663
VSSST
SPOP
0.9709
More...
Q9H195
Mucin-3B
DEG_SPOP_SBC_1
365:369
VSSST
SPOP
0.9057
More...