DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VVSST
Uniprot ID:
Q96B97
Source protein:
SH3 domain-containing kinase-binding protein 1
Source gene:
SH3KBP1
Class:
DEG_SPOP_SBC_1
Location:
469:473
E3 ligase:
SPOP
DEGRON score:
0.9973
ASA_SCORE:
70.76
COIL:
0.7318
CONS_SCORE:
0.3958
DSS_SCORE:
0.4972
HELIX:
0.0902
FCONS_SCORE:
1.0872
RIG_SCORE:
0.6781
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V469M
TCGA-EA-A3HQ
CESC
TCGA
VVSST
DEG_SPOP_SBC_1
0.7208
p.T473A
TCGA-F5-6814
READ
TCGA
VVSST
DEG_SPOP_SBC_1
0.825
p.T473A
DO36556
READ
ICGC
VVSST
DEG_SPOP_SBC_1
0.825
p.D460N
TCGA-GC-A6I1
BLCA
TCGA
VVSST
DEG_SPOP_SBC_1
0.0833
p.D460N
DO49770
BLCA
ICGC
VVSST
DEG_SPOP_SBC_1
0.0833
p.L473P
DO7855
COAD
ICGC
VVSST
DEG_SPOP_SBC_1
0.7582
p.A481V
DO233267
GACA
ICGC
VVSST
DEG_SPOP_SBC_1
0.1111
p.P479L
DO233867
GACA
ICGC
VVSST
DEG_SPOP_SBC_1
0.1667
p.T480N
DO49665
LIAD
ICGC
VVSST
DEG_SPOP_SBC_1
0.1389
p.S482R
DO229019
LICA
ICGC
VVSST
DEG_SPOP_SBC_1
0.0833
p.S482R
DO229008
LICA
ICGC
VVSST
DEG_SPOP_SBC_1
0.0833
p.P463S
DO222749
MELA
ICGC
VVSST
DEG_SPOP_SBC_1
0.1667
p.S482T
DO229259
THCA
ICGC
VVSST
DEG_SPOP_SBC_1
0.0833
p.E464D
SIDM00528
Breast Carcinoma
GDSC
VVSST
DEG_SPOP_SBC_1
0.1944
p.E464D
ACH-000934
Breast Cancer
CCLE
VVSST
DEG_SPOP_SBC_1
0.1944
p.E464D
MDA-MB-361
breast
COSMIC
VVSST
DEG_SPOP_SBC_1
0.1944
p.S471L
ACH-000490
Cervical Cancer
CCLE
VVSST
DEG_SPOP_SBC_1
0.7667
p.P469L
SNU-1040
large_intestine
COSMIC
VVSST
DEG_SPOP_SBC_1
0.7582
Drug responses associated with SH3KBP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43294
Transforming growth factor beta-1-induced transcript 1 protein
DEG_SPOP_SBC_1
184:188
VVSST
SPOP
0.9948
More...
P16144
Integrin beta-4
DEG_SPOP_SBC_1
1230:1234
VVSST
SPOP
0.5329
More...
P21583
Kit ligand
DEG_SPOP_SBC_1
164:168
VVSST
SPOP
0.9767
More...
P51003
Poly
DEG_SPOP_SBC_1
615:619
VVSST
SPOP
0.7739
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
1337:1341
VVSST
SPOP
0.7602
More...
Q12830
Nucleosome-remodeling factor subunit BPTF
DEG_SPOP_SBC_1
1739:1743
VVSST
SPOP
0.9233
More...
Q14241
Elongin-A
DEG_SPOP_SBC_1
763:767
VVSST
SPOP
0.7077
More...
Q8N573
Oxidation resistance protein 1
DEG_SPOP_SBC_1
199:203
VVSST
SPOP
0.9992
More...
Q96B97
SH3 domain-containing kinase-binding protein 1
DEG_SPOP_SBC_1
469:473
VVSST
SPOP
0.9973
More...
Q9BXR0
Queuine tRNA-ribosyltransferase catalytic subunit 1
DEG_SPOP_SBC_1
161:165
VVSST
SPOP
0.5555
More...
Q9HCP0
Casein kinase I isoform gamma-1
DEG_SPOP_SBC_1
370:374
VVSST
SPOP
0.9967
More...
Q9NYB9
Abl interactor 2
DEG_SPOP_SBC_1
337:341
VVSST
SPOP
0.9646
More...
Q9Y6M4
Casein kinase I isoform gamma-3
DEG_SPOP_SBC_1
395:399
VVSST
SPOP
0.9966
More...
Q9NRJ5
Poly
DEG_SPOP_SBC_1
614:618
VVSST
SPOP
0.8298
More...
Q8NEM2
SHC SH2 domain-binding protein 1
DEG_SPOP_SBC_1
334:338
VVSST
SPOP
0.5138
More...