DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PDSSS
Uniprot ID:
Q9NWZ3
Source protein:
Interleukin-1 receptor-associated kinase 4
Source gene:
IRAK4
Class:
DEG_SPOP_SBC_1
Location:
148:152
E3 ligase:
SPOP
DEGRON score:
0.9855
ASA_SCORE:
88.1
COIL:
0.9558
CONS_SCORE:
0.3958
DSS_SCORE:
0.6389
HELIX:
0.0292
FCONS_SCORE:
1.112
RIG_SCORE:
0.5785
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S144I
TCGA-06-2569
GBM
TCGA
PDSSS
DEG_SPOP_SBC_1
0.2222
p.P148A
TCGA-61-1900
OV
TCGA
PDSSS
DEG_SPOP_SBC_1
0.6392
p.Q139P
TCGA-A5-A0G2
UCEC
TCGA
PDSSS
DEG_SPOP_SBC_1
0.0833
p.Q139H
TCGA-XF-A9ST
BLCA
TCGA
PDSSS
DEG_SPOP_SBC_1
0.0833
p.D148H
DO502
BLCA
ICGC
PDSSS
DEG_SPOP_SBC_1
0.7688
p.G144A
DO233262
GACA
ICGC
PDSSS
DEG_SPOP_SBC_1
0.2222
p.L146F
DO229009
LICA
ICGC
PDSSS
DEG_SPOP_SBC_1
0.2778
p.G144S
DO232462
PBCA
ICGC
PDSSS
DEG_SPOP_SBC_1
0.2222
p.Y138H
DO38887
STAD
ICGC
PDSSS
DEG_SPOP_SBC_1
0.0556
p.P153A
SIDM00365
Small Cell Lung Carcinoma
GDSC
PDSSS
DEG_SPOP_SBC_1
0.3056
p.P153A
ACH-002196
Lung Cancer
CCLE
PDSSS
DEG_SPOP_SBC_1
0.3056
p.P153A
SBC-1
lung
COSMIC
PDSSS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with IRAK4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
SIDM00358
STAD|stomach
p.R183Q (No)
GDSC
IRAK4_4710
279.02
SIDM00614
LIHC|liver
p.R183Q (No)
GDSC
IRAK4_4710
188.06
SIDM00023
ESCA|oesophagus
p.W74* (No)
GDSC
IRAK4_4710
137.88
SIDM00584
UNCLASSIFIED|osteosarcoma
p.I5V (No)
GDSC
IRAK4_4710
48.564
SIDM00527
COREAD|large_intestine
p.M218I (No)
GDSC
IRAK4_4710
62.409
SIDM01007
ALL|lymphoblastic_leukemia
p.I381V (No)
GDSC
IRAK4_4710
47.684
SIDM00537
COREAD|large_intestine
p.K41fs*13 (No)
GDSC
IRAK4_4710
266.44
SIDM00630
BRCA|breast
p.H390R (No)
GDSC
IRAK4_4710
191.71
SIDM00217
COREAD|large_intestine
p.K416R (No)
GDSC
IRAK4_4710
213.4
SIDM00660
COREAD|large_intestine
p.Q139* (Yes)
GDSC
IRAK4_4710
75.023
SIDM01154
ALL|lymphoblastic_T_cell_leukaemia
p.A38V (No)
GDSC
IRAK4_4710
175.27
SIDM00448
DLBC|B_cell_lymphoma
p.H306N (No)
GDSC
IRAK4_4710
235.89
SIDM01005
LAML|acute_myeloid_leukaemia
p.R183Q (No)
GDSC
IRAK4_4710
22.104
SIDM00119
LUAD|lung_NSCLC_adenocarcinoma
p.S425fs*33 (No)
GDSC
IRAK4_4710
150.41
SIDM00238
OV|ovary
p.R183Q (No)
GDSC
IRAK4_4710
333.18
All proteins holding degron of PDSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00507
Probable ubiquitin carboxyl-terminal hydrolase FAF-Y
DEG_SPOP_SBC_1
977:981
PDSSS
SPOP
0.9861
More...
O14981
TATA-binding protein-associated factor 172
DEG_SPOP_SBC_1
269:273
PDSSS
SPOP
0.935
More...
P02751
Fibronectin
DEG_SPOP_SBC_1
1863:1867
PDSSS
SPOP
0.902
More...
P23760
Paired box protein Pax-3
DEG_SPOP_SBC_1
348:352
PDSSS
SPOP
0.9277
More...
P28702
Retinoic acid receptor RXR-beta
DEG_SPOP_SBC_1
83:87
PDSSS
SPOP
0.9539
More...
P48553
Trafficking protein particle complex subunit 10
DEG_SPOP_SBC_1
1199:1203
PDSSS
SPOP
0.9812
More...
P56645
Period circadian protein homolog 3
DEG_SPOP_SBC_1
748:752
PDSSS
SPOP
0.8579
More...
Q12947
Forkhead box protein F2
DEG_SPOP_SBC_1
310:314
PDSSS
SPOP
0.9763
More...
Q12948
Forkhead box protein C1
DEG_SPOP_SBC_1
260:264
PDSSS
SPOP
0.9877
More...
Q14517
Protocadherin Fat 1
DEG_SPOP_SBC_1
1166:1170
PDSSS
SPOP
0.9878
More...
Q15642
Cdc42-interacting protein 4
DEG_SPOP_SBC_1
498:502
PDSSS
SPOP
0.9962
More...
Q6VAB6
Kinase suppressor of Ras 2
DEG_SPOP_SBC_1
515:519
PDSSS
SPOP
0.9977
More...
Q7LBE3
Solute carrier family 26 member 9
DEG_SPOP_SBC_1
629:633
PDSSS
SPOP
0.9618
More...
Q7Z333
Probable helicase senataxin
DEG_SPOP_SBC_1
1485:1489
PDSSS
SPOP
0.8761
More...
Q86VZ4
Low-density lipoprotein receptor-related protein 11
DEG_SPOP_SBC_1
417:421
PDSSS
SPOP
0.9592
More...
Q8N441
Fibroblast growth factor receptor-like 1
DEG_SPOP_SBC_1
129:133
PDSSS
SPOP
0.8851
More...
Q8TE77
Protein phosphatase Slingshot homolog 3
DEG_SPOP_SBC_1
152:156
PDSSS
SPOP
0.7282
More...
Q92613
Protein Jade-3
DEG_SPOP_SBC_1
567:571
PDSSS
SPOP
0.9916
More...
Q93008
Probable ubiquitin carboxyl-terminal hydrolase FAF-X
DEG_SPOP_SBC_1
976:980
PDSSS
SPOP
0.9934
More...
Q9BRK4
Leucine zipper putative tumor suppressor 2
DEG_SPOP_SBC_1
302:306
PDSSS
SPOP
0.9992
More...
Q9BWT3
Poly
DEG_SPOP_SBC_1
712:716
PDSSS
SPOP
0.9943
More...
Q9H4Z2
Zinc finger protein 335
DEG_SPOP_SBC_1
86:90
PDSSS
SPOP
0.9916
More...
Q9NWZ3
Interleukin-1 receptor-associated kinase 4
DEG_SPOP_SBC_1
148:152
PDSSS
SPOP
0.9855
More...
Q9NXG0
Centlein
DEG_SPOP_SBC_1
1396:1400
PDSSS
SPOP
0.9251
More...
Q9UPT6
C-Jun-amino-terminal kinase-interacting protein 3
DEG_SPOP_SBC_1
945:949
PDSSS
SPOP
0.9951
More...
P31267
Homeobox protein Hox-A6
DEG_SPOP_SBC_1
113:117
PDSSS
SPOP
0.545
More...
Q2T9L4
Inhibitory synaptic factor 1
DEG_SPOP_SBC_1
157:161
PDSSS
SPOP
0.9993
More...
Q5H9T9
Fibrous sheath CABYR-binding protein
DEG_SPOP_SBC_1
170:174
PDSSS
SPOP
0.9796
More...
Q8TA94
Zinc finger protein 563
DEG_SPOP_SBC_1
263:267
PDSSS
SPOP
0.9213
More...
P13985
Putative HTLV-1-related endogenous sequence
DEG_SPOP_SBC_1
139:143
PDSSS
SPOP
0.8586
More...