DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PGSTS
Uniprot ID:
P56696
Source protein:
Potassium voltage-gated channel subfamily KQT member 4
Source gene:
KCNQ4
Class:
DEG_SPOP_SBC_1
Location:
421:425
E3 ligase:
SPOP
DEGRON score:
0.8114
ASA_SCORE:
63.28
COIL:
0.868
CONS_SCORE:
0.4113
DSS_SCORE:
0.5472
HELIX:
0.0586
FCONS_SCORE:
1.0956
RIG_SCORE:
0.621
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P421S
TCGA-49-6743
LUAD
TCGA
PGSTS
DEG_SPOP_SBC_1
0.6752
p.P421S
DO26092
LUAD
ICGC
PGSTS
DEG_SPOP_SBC_1
0.6752
p.S431R
TCGA-OR-A5J8
ACC
TCGA
PGSTS
DEG_SPOP_SBC_1
0.1667
p.R420W
DO233115
GACA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.3056
p.R420W
RERF-LC-MS
lung
COSMIC
PGSTS
DEG_SPOP_SBC_1
0.3056
p.R433L
DO228974
LICA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.1111
p.R433L
DO229018
LICA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.1111
p.M434I
DO229027
LICA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.0833
p.E430K
DO50970
LICA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.1944
p.V415I
DO228142
PBCA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.1667
p.Y412S
DO229144
THCA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.0833
p.T435A
CCK-81
large_intestine
COSMIC
PGSTS
DEG_SPOP_SBC_1
0.0556
p.Q415R
HCC1569
breast
COSMIC
PGSTS
DEG_SPOP_SBC_1
0.1667
p.R434H
S-117
soft_tissue
COSMIC
PGSTS
DEG_SPOP_SBC_1
0.0833
Drug responses associated with KCNQ4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PGSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00444
Serine/threonine-protein kinase PLK4
DEG_SPOP_SBC_1
807:811
PGSTS
SPOP
0.9916
More...
O43159
Ribosomal RNA-processing protein 8
DEG_SPOP_SBC_1
172:176
PGSTS
SPOP
0.9713
More...
O76039
Cyclin-dependent kinase-like 5
DEG_SPOP_SBC_1
390:394
PGSTS
SPOP
0.9869
More...
P33076
MHC class II transactivator
DEG_SPOP_SBC_1
284:288
PGSTS
SPOP
0.9991
More...
P45974
Ubiquitin carboxyl-terminal hydrolase 5
DEG_SPOP_SBC_1
713:717
PGSTS
SPOP
0.8563
More...
P53814
Smoothelin
DEG_SPOP_SBC_1
195:199
PGSTS
SPOP
0.5525
More...
P56696
Potassium voltage-gated channel subfamily KQT member 4
DEG_SPOP_SBC_1
421:425
PGSTS
SPOP
0.8114
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
1853:1857
PGSTS
SPOP
0.9915
More...
Q03989
AT-rich interactive domain-containing protein 5A
DEG_SPOP_SBC_1
122:126
PGSTS
SPOP
0.9788
More...
Q12852
Mitogen-activated protein kinase kinase kinase 12
DEG_SPOP_SBC_1
650:654
PGSTS
SPOP
0.9557
More...
Q14721
Potassium voltage-gated channel subfamily B member 1
DEG_SPOP_SBC_1
779:783
PGSTS
SPOP
0.985
More...
Q14865
AT-rich interactive domain-containing protein 5B
DEG_SPOP_SBC_1
385:389
PGSTS
SPOP
0.9096
More...
Q6RFH5
WD repeat-containing protein 74
DEG_SPOP_SBC_1
380:384
PGSTS
SPOP
0.9317
More...
Q8N5S9
Calcium/calmodulin-dependent protein kinase kinase 1
DEG_SPOP_SBC_1
55:59
PGSTS
SPOP
0.9992
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7333:7337
PGSTS
SPOP
0.9942
More...
Q96KQ4
Apoptosis-stimulating of p53 protein 1
DEG_SPOP_SBC_1
473:477
PGSTS
SPOP
0.986
More...
Q9H1V8
Sodium-dependent neutral amino acid transporter SLC6A17
DEG_SPOP_SBC_1
697:701
PGSTS
SPOP
0.9984
More...
Q9NQW1
Protein transport protein Sec31B
DEG_SPOP_SBC_1
925:929
PGSTS
SPOP
0.9889
More...
Q9NYV4
Cyclin-dependent kinase 12
DEG_SPOP_SBC_1
266:270
PGSTS
SPOP
0.9741
More...
Q9NYZ3
G2 and S phase-expressed protein 1
DEG_SPOP_SBC_1
301:305
PGSTS
SPOP
0.9993
More...
Q9P0L0
Vesicle-associated membrane protein-associated protein A
DEG_SPOP_SBC_1
212:216
PGSTS
SPOP
0.8559
More...
Q9P209
Centrosomal protein of 72 kDa
DEG_SPOP_SBC_1
212:216
PGSTS
SPOP
0.9405
More...
Q9UJY5
ADP-ribosylation factor-binding protein GGA1
DEG_SPOP_SBC_1
313:317
PGSTS
SPOP
0.8423
More...
Q9UPA5
Protein bassoon
DEG_SPOP_SBC_1
73:77
PGSTS
SPOP
0.7536
More...
Q96T92
Insulinoma-associated protein 2
DEG_SPOP_SBC_1
414:418
PGSTS
SPOP
0.9525
More...
O75157
TSC22 domain family protein 2
DEG_SPOP_SBC_1
752:756
PGSTS
SPOP
0.9353
More...