DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PGSTS
Uniprot ID:
Q14721
Source protein:
Potassium voltage-gated channel subfamily B member 1
Source gene:
KCNB1
Class:
DEG_SPOP_SBC_1
Location:
779:783
E3 ligase:
SPOP
DEGRON score:
0.985
ASA_SCORE:
69.04
COIL:
0.9248
CONS_SCORE:
0.2828
DSS_SCORE:
0.6921
HELIX:
0.022
FCONS_SCORE:
0.9616
RIG_SCORE:
0.5269
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P774L
TCGA-AQ-A04H
BRCA
TCGA
PGSTS
DEG_SPOP_SBC_1
0.1944
p.P774L
DO3340
BRCA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.1944
p.S792L
TCGA-AX-A05Z
UCEC
TCGA
PGSTS
DEG_SPOP_SBC_1
0.0833
p.S792L
TCGA-EY-A1GI
UCEC
TCGA
PGSTS
DEG_SPOP_SBC_1
0.0833
p.S792L
DO222762
COCA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.0833
p.S792L
DO40884
UCEC
ICGC
PGSTS
DEG_SPOP_SBC_1
0.0833
p.S792L
DO41211
UCEC
ICGC
PGSTS
DEG_SPOP_SBC_1
0.0833
p.T788M
TCGA-B5-A0JY
UCEC
TCGA
PGSTS
DEG_SPOP_SBC_1
0.6389
p.T788M
DO43041
UCEC
ICGC
PGSTS
DEG_SPOP_SBC_1
0.6389
p.P779S
TCGA-ER-A3PL
SKCM
TCGA
PGSTS
DEG_SPOP_SBC_1
0.6752
p.P779S
DO37495
SKCM
ICGC
PGSTS
DEG_SPOP_SBC_1
0.6752
p.P784S
TCGA-FS-A1ZK
SKCM
TCGA
PGSTS
DEG_SPOP_SBC_1
0.3056
p.P784S
DO37474
SKCM
ICGC
PGSTS
DEG_SPOP_SBC_1
0.3056
p.P784T
DO229026
LICA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.3056
p.S773N
SIDM02050
Colorectal Carcinoma
GDSC
PGSTS
DEG_SPOP_SBC_1
0.1667
p.G789E
SIDM00450
Acute Myeloid Leukemia
GDSC
PGSTS
DEG_SPOP_SBC_1
0.1667
p.G789E
ACH-000218
Leukemia
CCLE
PGSTS
DEG_SPOP_SBC_1
0.1667
p.G789E
PL-21
haematopoietic_and_lymphoid_tissue
COSMIC
PGSTS
DEG_SPOP_SBC_1
0.1667
p.T788K
SIDM01259
B-Lymphoblastic Leukemia
GDSC
PGSTS
DEG_SPOP_SBC_1
0.6389
p.T788K
SIDM01144
Gastric Carcinoma
GDSC
PGSTS
DEG_SPOP_SBC_1
0.6389
p.T788K
SIDM00988
Kidney Carcinoma
GDSC
PGSTS
DEG_SPOP_SBC_1
0.6389
p.T788K
SIDM01695
Acute Myeloid Leukemia
GDSC
PGSTS
DEG_SPOP_SBC_1
0.6389
p.T788K
SIDM01463
Endometrial Carcinoma
GDSC
PGSTS
DEG_SPOP_SBC_1
0.6389
p.T788K
SIDM00159
Biliary Tract Carcinoma
GDSC
PGSTS
DEG_SPOP_SBC_1
0.6389
p.T782A
SIDM00516
Melanoma
GDSC
PGSTS
DEG_SPOP_SBC_1
0.7139
p.T782A
ACH-002166
Skin Cancer
CCLE
PGSTS
DEG_SPOP_SBC_1
0.7139
p.T782A
MZ7-mel
skin
COSMIC
PGSTS
DEG_SPOP_SBC_1
0.7139
p.D771E
SIDM00534
Colorectal Carcinoma
GDSC
PGSTS
DEG_SPOP_SBC_1
0.1111
p.D771E
ACH-000986
Colon/Colorectal Cancer
CCLE
PGSTS
DEG_SPOP_SBC_1
0.1111
p.D771E
HT-115
large_intestine
COSMIC
PGSTS
DEG_SPOP_SBC_1
0.1111
p.K776R
SIDM01780
B-Cell Non-Hodgkin's Lymphoma
GDSC
PGSTS
DEG_SPOP_SBC_1
0.3611
p.K776R
ACH-000388
Lymphoma
CCLE
PGSTS
DEG_SPOP_SBC_1
0.3611
Drug responses associated with KCNB1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PGSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00444
Serine/threonine-protein kinase PLK4
DEG_SPOP_SBC_1
807:811
PGSTS
SPOP
0.9916
More...
O43159
Ribosomal RNA-processing protein 8
DEG_SPOP_SBC_1
172:176
PGSTS
SPOP
0.9713
More...
O76039
Cyclin-dependent kinase-like 5
DEG_SPOP_SBC_1
390:394
PGSTS
SPOP
0.9869
More...
P33076
MHC class II transactivator
DEG_SPOP_SBC_1
284:288
PGSTS
SPOP
0.9991
More...
P45974
Ubiquitin carboxyl-terminal hydrolase 5
DEG_SPOP_SBC_1
713:717
PGSTS
SPOP
0.8563
More...
P53814
Smoothelin
DEG_SPOP_SBC_1
195:199
PGSTS
SPOP
0.5525
More...
P56696
Potassium voltage-gated channel subfamily KQT member 4
DEG_SPOP_SBC_1
421:425
PGSTS
SPOP
0.8114
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
1853:1857
PGSTS
SPOP
0.9915
More...
Q03989
AT-rich interactive domain-containing protein 5A
DEG_SPOP_SBC_1
122:126
PGSTS
SPOP
0.9788
More...
Q12852
Mitogen-activated protein kinase kinase kinase 12
DEG_SPOP_SBC_1
650:654
PGSTS
SPOP
0.9557
More...
Q14721
Potassium voltage-gated channel subfamily B member 1
DEG_SPOP_SBC_1
779:783
PGSTS
SPOP
0.985
More...
Q14865
AT-rich interactive domain-containing protein 5B
DEG_SPOP_SBC_1
385:389
PGSTS
SPOP
0.9096
More...
Q6RFH5
WD repeat-containing protein 74
DEG_SPOP_SBC_1
380:384
PGSTS
SPOP
0.9317
More...
Q8N5S9
Calcium/calmodulin-dependent protein kinase kinase 1
DEG_SPOP_SBC_1
55:59
PGSTS
SPOP
0.9992
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7333:7337
PGSTS
SPOP
0.9942
More...
Q96KQ4
Apoptosis-stimulating of p53 protein 1
DEG_SPOP_SBC_1
473:477
PGSTS
SPOP
0.986
More...
Q9H1V8
Sodium-dependent neutral amino acid transporter SLC6A17
DEG_SPOP_SBC_1
697:701
PGSTS
SPOP
0.9984
More...
Q9NQW1
Protein transport protein Sec31B
DEG_SPOP_SBC_1
925:929
PGSTS
SPOP
0.9889
More...
Q9NYV4
Cyclin-dependent kinase 12
DEG_SPOP_SBC_1
266:270
PGSTS
SPOP
0.9741
More...
Q9NYZ3
G2 and S phase-expressed protein 1
DEG_SPOP_SBC_1
301:305
PGSTS
SPOP
0.9993
More...
Q9P0L0
Vesicle-associated membrane protein-associated protein A
DEG_SPOP_SBC_1
212:216
PGSTS
SPOP
0.8559
More...
Q9P209
Centrosomal protein of 72 kDa
DEG_SPOP_SBC_1
212:216
PGSTS
SPOP
0.9405
More...
Q9UJY5
ADP-ribosylation factor-binding protein GGA1
DEG_SPOP_SBC_1
313:317
PGSTS
SPOP
0.8423
More...
Q9UPA5
Protein bassoon
DEG_SPOP_SBC_1
73:77
PGSTS
SPOP
0.7536
More...
Q96T92
Insulinoma-associated protein 2
DEG_SPOP_SBC_1
414:418
PGSTS
SPOP
0.9525
More...
O75157
TSC22 domain family protein 2
DEG_SPOP_SBC_1
752:756
PGSTS
SPOP
0.9353
More...