DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PGSTS
Uniprot ID:
Q9P0L0
Source protein:
Vesicle-associated membrane protein-associated protein A
Source gene:
VAPA
Class:
DEG_SPOP_SBC_1
Location:
212:216
E3 ligase:
SPOP
DEGRON score:
0.8559
ASA_SCORE:
75.58
COIL:
0.8558
CONS_SCORE:
0.3505
DSS_SCORE:
0.4992
HELIX:
0.0854
FCONS_SCORE:
1.0618
RIG_SCORE:
0.5917
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G202R
TCGA-A5-A0G2
UCEC
TCGA
PGSTS
DEG_SPOP_SBC_1
0.0556
p.G202R
DO41235
UCEC
ICGC
PGSTS
DEG_SPOP_SBC_1
0.0556
p.R226I
TCGA-BS-A0UV
UCEC
TCGA
PGSTS
DEG_SPOP_SBC_1
0.0556
p.R226I
DO42793
UCEC
ICGC
PGSTS
DEG_SPOP_SBC_1
0.0556
p.S209R
DO1217
BRCA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.25
p.C224F
DO229026
LICA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.1111
p.M204I
DO229037
LICA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.1111
p.V210F
DO229045
LICA
ICGC
PGSTS
DEG_SPOP_SBC_1
0.2778
p.E223D
SIDM01000
Melanoma
GDSC
PGSTS
DEG_SPOP_SBC_1
0.1389
p.A218T
ACH-000982
Colon/Colorectal Cancer
CCLE
PGSTS
DEG_SPOP_SBC_1
0.2778
p.A218T
ACH-001345
Colon/Colorectal Cancer
CCLE
PGSTS
DEG_SPOP_SBC_1
0.2778
p.A218T
GP5d
large_intestine
COSMIC
PGSTS
DEG_SPOP_SBC_1
0.2778
p.V224A
ACH-002272
Lymphoma
CCLE
PGSTS
DEG_SPOP_SBC_1
0.1111
p.V224A
MHH-PREB-1
haematopoietic_and_lymphoid_tissue
COSMIC
PGSTS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with VAPA mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PGSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00444
Serine/threonine-protein kinase PLK4
DEG_SPOP_SBC_1
807:811
PGSTS
SPOP
0.9916
More...
O43159
Ribosomal RNA-processing protein 8
DEG_SPOP_SBC_1
172:176
PGSTS
SPOP
0.9713
More...
O76039
Cyclin-dependent kinase-like 5
DEG_SPOP_SBC_1
390:394
PGSTS
SPOP
0.9869
More...
P33076
MHC class II transactivator
DEG_SPOP_SBC_1
284:288
PGSTS
SPOP
0.9991
More...
P45974
Ubiquitin carboxyl-terminal hydrolase 5
DEG_SPOP_SBC_1
713:717
PGSTS
SPOP
0.8563
More...
P53814
Smoothelin
DEG_SPOP_SBC_1
195:199
PGSTS
SPOP
0.5525
More...
P56696
Potassium voltage-gated channel subfamily KQT member 4
DEG_SPOP_SBC_1
421:425
PGSTS
SPOP
0.8114
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
1853:1857
PGSTS
SPOP
0.9915
More...
Q03989
AT-rich interactive domain-containing protein 5A
DEG_SPOP_SBC_1
122:126
PGSTS
SPOP
0.9788
More...
Q12852
Mitogen-activated protein kinase kinase kinase 12
DEG_SPOP_SBC_1
650:654
PGSTS
SPOP
0.9557
More...
Q14721
Potassium voltage-gated channel subfamily B member 1
DEG_SPOP_SBC_1
779:783
PGSTS
SPOP
0.985
More...
Q14865
AT-rich interactive domain-containing protein 5B
DEG_SPOP_SBC_1
385:389
PGSTS
SPOP
0.9096
More...
Q6RFH5
WD repeat-containing protein 74
DEG_SPOP_SBC_1
380:384
PGSTS
SPOP
0.9317
More...
Q8N5S9
Calcium/calmodulin-dependent protein kinase kinase 1
DEG_SPOP_SBC_1
55:59
PGSTS
SPOP
0.9992
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7333:7337
PGSTS
SPOP
0.9942
More...
Q96KQ4
Apoptosis-stimulating of p53 protein 1
DEG_SPOP_SBC_1
473:477
PGSTS
SPOP
0.986
More...
Q9H1V8
Sodium-dependent neutral amino acid transporter SLC6A17
DEG_SPOP_SBC_1
697:701
PGSTS
SPOP
0.9984
More...
Q9NQW1
Protein transport protein Sec31B
DEG_SPOP_SBC_1
925:929
PGSTS
SPOP
0.9889
More...
Q9NYV4
Cyclin-dependent kinase 12
DEG_SPOP_SBC_1
266:270
PGSTS
SPOP
0.9741
More...
Q9NYZ3
G2 and S phase-expressed protein 1
DEG_SPOP_SBC_1
301:305
PGSTS
SPOP
0.9993
More...
Q9P0L0
Vesicle-associated membrane protein-associated protein A
DEG_SPOP_SBC_1
212:216
PGSTS
SPOP
0.8559
More...
Q9P209
Centrosomal protein of 72 kDa
DEG_SPOP_SBC_1
212:216
PGSTS
SPOP
0.9405
More...
Q9UJY5
ADP-ribosylation factor-binding protein GGA1
DEG_SPOP_SBC_1
313:317
PGSTS
SPOP
0.8423
More...
Q9UPA5
Protein bassoon
DEG_SPOP_SBC_1
73:77
PGSTS
SPOP
0.7536
More...
Q96T92
Insulinoma-associated protein 2
DEG_SPOP_SBC_1
414:418
PGSTS
SPOP
0.9525
More...
O75157
TSC22 domain family protein 2
DEG_SPOP_SBC_1
752:756
PGSTS
SPOP
0.9353
More...