DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPYY
Uniprot ID:
P37231
Source protein:
Peroxisome proliferator-activated receptor gamma
Source gene:
PPARG
Class:
ITCH
Location:
113:116
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.5611
ASA_SCORE:
86.4
COIL:
0.8528
CONS_SCORE:
0.447
DSS_SCORE:
0.3983
HELIX:
0.0855
FCONS_SCORE:
0.9934
RIG_SCORE:
0.6924
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S117Y
TCGA-E6-A1LX
UCEC
TCGA
PPYY
ITCH
0.3056
p.R112H
DO234387
ESAD
ICGC
PPYY
ITCH
0.75
p.R112H
DO47869
STAD
ICGC
PPYY
ITCH
0.75
p.Y123C
DO50856
LICA
ICGC
PPYY
ITCH
0.1389
p.G124R
DO220886
MELA
ICGC
PPYY
ITCH
0.1111
p.G120T
DO222875
MELA
ICGC
PPYY
ITCH
0.2222
p.S112C
SIDM00528
Breast Carcinoma
GDSC
PPYY
ITCH
0.75
p.S112C
MDA-MB-361
breast
COSMIC
PPYY
ITCH
0.75
Drug responses associated with PPARG mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
SIDM01164
LGG|glioma
p.A263V (No)
GDSC
FH535
5.4913
SIDM01164
LGG|glioma
p.A263V (No)
GDSC
FH535
5.4913
SIDM01045
UCEC|endometrium
p.L298fs*38 (No)
GDSC
FH535
2.9707
SIDM01045
UCEC|endometrium
p.L298fs*38 (No)
GDSC
FH535
2.9707
SIDM00980
STAD|stomach
p.V90I (No)
GDSC
FH535
3.642
SIDM00980
STAD|stomach
p.V90I (No)
GDSC
FH535
3.642
SIDM00612
LGG|glioma
p.I264M (No)
GDSC
FH535
23.4365
SIDM00612
LGG|glioma
p.I264M (No)
GDSC
FH535
23.4365
SIDM00526
LCML|chronic_myeloid_leukaemia
p.S186fs*2 (No)
GDSC
FH535
19.962
SIDM00526
LCML|chronic_myeloid_leukaemia
p.S186fs*2 (No)
GDSC
FH535
19.962
SIDM00529
BRCA|breast
p.V335L (No)
GDSC
FH535
6.986
SIDM00529
BRCA|breast
p.V335L (No)
GDSC
FH535
6.986
SIDM00256
NB|neuroblastoma
p.V48M (No)
GDSC
FH535
4.4189
SIDM00256
NB|neuroblastoma
p.V48M (No)
GDSC
FH535
4.4189
SIDM00403
ALL|lymphoblastic_T_cell_leukaemia
p.E28K (No)
GDSC
FH535
6.5838
SIDM00403
ALL|lymphoblastic_T_cell_leukaemia
p.E28K (No)
GDSC
FH535
6.5838
SIDM01085
BLCA|bladder
p.T475M (No)
GDSC
FH535
86.5513
SIDM01085
BLCA|bladder
p.T475M (No)
GDSC
FH535
86.5513
SIDM01159
UNCLASSIFIED|soft_tissue_other
p.E304K (No)
GDSC
FH535
6.8558
SIDM01159
UNCLASSIFIED|soft_tissue_other
p.E304K (No)
GDSC
FH535
6.8558
SIDM00257
NB|neuroblastoma
p.L480P (No)
GDSC
FH535
5.255
SIDM00257
NB|neuroblastoma
p.L480P (No)
GDSC
FH535
5.255
SIDM00789
COREAD|large_intestine
p.K450Q (No)
GDSC
FH535
6.3457
SIDM00789
COREAD|large_intestine
p.K450Q (No)
GDSC
FH535
6.3457
SIDM01175
UNCLASSIFIED|fibrosarcoma
p.S370F (No)
GDSC
FH535
29.3362
SIDM01175
UNCLASSIFIED|fibrosarcoma
p.S370F (No)
GDSC
FH535
29.3362
SIDM01112
UNCLASSIFIED|bone_other
p.V335L (No)
GDSC
FH535
5.9799
SIDM01112
UNCLASSIFIED|bone_other
p.V335L (No)
GDSC
FH535
5.9799
SIDM01154
ALL|lymphoblastic_T_cell_leukaemia
p.L493P (No)
GDSC
FH535
5.3699
SIDM01154
ALL|lymphoblastic_T_cell_leukaemia
p.L493P (No)
GDSC
FH535
5.3699
SIDM00528
BRCA|breast
p.S112C (Yes)
GDSC
FH535
2.7366
SIDM00528
BRCA|breast
p.S112C (Yes)
GDSC
FH535
2.7366
SIDM00364
ALL|lymphoblastic_leukemia
p.P255R (No)
GDSC
FH535
11.5572
SIDM00364
ALL|lymphoblastic_leukemia
p.P255R (No)
GDSC
FH535
11.5572
SIDM00339
LUAD|lung_NSCLC_adenocarcinoma
p.V478L (No)
GDSC
FH535
3.8752
SIDM00339
LUAD|lung_NSCLC_adenocarcinoma
p.V478L (No)
GDSC
FH535
3.8752
SIDM00761
SCLC|lung_small_cell_carcinoma
p.I81F (No)
GDSC
FH535
32.4868
SIDM00761
SCLC|lung_small_cell_carcinoma
p.I81F (No)
GDSC
FH535
32.4868
SIDM00367
SCLC|lung_small_cell_carcinoma
p.T67A (No)
GDSC
FH535
0.5396
SIDM00367
SCLC|lung_small_cell_carcinoma
p.T67A (No)
GDSC
FH535
0.5396
All proteins holding degron of PPYY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O94915
Protein furry homolog-like
ITCH
1462:1465
PPYY
ITCH,NEDD4
0.9735
More...
P13611
Versican core protein
ITCH
2804:2807
PPYY
ITCH,NEDD4
0.882
More...
P13942
Collagen alpha-2
ITCH
277:280
PPYY
ITCH,NEDD4
0.9939
More...
P23771
Trans-acting T-cell-specific transcription factor GATA-3
ITCH
61:64
PPYY
ITCH,NEDD4
0.9955
More...
P37231
Peroxisome proliferator-activated receptor gamma
ITCH
113:116
PPYY
ITCH,NEDD4
0.5611
More...
P67809
Y-box-binding protein 1
ITCH
194:197
PPYY
ITCH,NEDD4
0.9958
More...
Q13310
Polyadenylate-binding protein 4
ITCH
420:423
PPYY
ITCH,NEDD4
0.9823
More...
Q6ZTQ4
Cadherin-related family member 3
ITCH
438:441
PPYY
ITCH,NEDD4
0.6494
More...
Q7Z7F0
KH homology domain-containing protein 4
ITCH
352:355
PPYY
ITCH,NEDD4
0.92
More...
Q96AW1
Vesicular, overexpressed in cancer, prosurvival protein 1
ITCH
116:119
PPYY
ITCH,NEDD4
0.6737
More...
Q99439
Calponin-2
ITCH
300:303
PPYY
ITCH,NEDD4
0.9844
More...
Q9BUJ2
Heterogeneous nuclear ribonucleoprotein U-like protein 1
ITCH
834:837
PPYY
ITCH,NEDD4
0.9444
More...
Q9H040
DNA-dependent metalloprotease SPRTN
ITCH
177:180
PPYY
ITCH,NEDD4
0.7657
More...
Q9NRM1
Enamelin
ITCH
212:215
PPYY
ITCH,NEDD4
0.6712
More...
Q9P0X4
Voltage-dependent T-type calcium channel subunit alpha-1I
ITCH
254:257
PPYY
ITCH,NEDD4
0.5243
More...
Q9Y6H8
Gap junction alpha-3 protein
ITCH
269:272
PPYY
ITCH,NEDD4
0.9959
More...
P55808
Glycoprotein Xg
ITCH
50:53
PPYY
ITCH,NEDD4
0.8102
More...
Q5JSJ4
Integrator complex subunit 6-like
ITCH
424:427
PPYY
ITCH,NEDD4
0.9555
More...