DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPYY
Uniprot ID:
Q7Z7F0
Source protein:
KH homology domain-containing protein 4
Source gene:
KHDC4
Class:
ITCH
Location:
352:355
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.92
ASA_SCORE:
77.4
COIL:
0.9118
CONS_SCORE:
0.4313
DSS_SCORE:
0.5156
HELIX:
0.0213
FCONS_SCORE:
1.0038
RIG_SCORE:
0.6186
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V348I
SIDM00845
Burkitt's Lymphoma
GDSC
PPYY
ITCH
0.2222
p.V348I
SIDM00946
T-Lymphoblastic Leukemia
GDSC
PPYY
ITCH
0.2222
p.V348I
SIDM01519
Head and Neck Carcinoma
GDSC
PPYY
ITCH
0.2222
p.Q361L
SIDM01503
Small Cell Lung Carcinoma
GDSC
PPYY
ITCH
0.1667
p.T358I
CCRF-CEM
haematopoietic_and_lymphoid_tissue
COSMIC
PPYY
ITCH
0.25
p.S357G
Daudi
haematopoietic_and_lymphoid_tissue
COSMIC
PPYY
ITCH
0.2778
p.T342A
Daudi
haematopoietic_and_lymphoid_tissue
COSMIC
PPYY
ITCH
0.0556
Drug responses associated with KHDC4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPYY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O94915
Protein furry homolog-like
ITCH
1462:1465
PPYY
ITCH,NEDD4
0.9735
More...
P13611
Versican core protein
ITCH
2804:2807
PPYY
ITCH,NEDD4
0.882
More...
P13942
Collagen alpha-2
ITCH
277:280
PPYY
ITCH,NEDD4
0.9939
More...
P23771
Trans-acting T-cell-specific transcription factor GATA-3
ITCH
61:64
PPYY
ITCH,NEDD4
0.9955
More...
P37231
Peroxisome proliferator-activated receptor gamma
ITCH
113:116
PPYY
ITCH,NEDD4
0.5611
More...
P67809
Y-box-binding protein 1
ITCH
194:197
PPYY
ITCH,NEDD4
0.9958
More...
Q13310
Polyadenylate-binding protein 4
ITCH
420:423
PPYY
ITCH,NEDD4
0.9823
More...
Q6ZTQ4
Cadherin-related family member 3
ITCH
438:441
PPYY
ITCH,NEDD4
0.6494
More...
Q7Z7F0
KH homology domain-containing protein 4
ITCH
352:355
PPYY
ITCH,NEDD4
0.92
More...
Q96AW1
Vesicular, overexpressed in cancer, prosurvival protein 1
ITCH
116:119
PPYY
ITCH,NEDD4
0.6737
More...
Q99439
Calponin-2
ITCH
300:303
PPYY
ITCH,NEDD4
0.9844
More...
Q9BUJ2
Heterogeneous nuclear ribonucleoprotein U-like protein 1
ITCH
834:837
PPYY
ITCH,NEDD4
0.9444
More...
Q9H040
DNA-dependent metalloprotease SPRTN
ITCH
177:180
PPYY
ITCH,NEDD4
0.7657
More...
Q9NRM1
Enamelin
ITCH
212:215
PPYY
ITCH,NEDD4
0.6712
More...
Q9P0X4
Voltage-dependent T-type calcium channel subunit alpha-1I
ITCH
254:257
PPYY
ITCH,NEDD4
0.5243
More...
Q9Y6H8
Gap junction alpha-3 protein
ITCH
269:272
PPYY
ITCH,NEDD4
0.9959
More...
P55808
Glycoprotein Xg
ITCH
50:53
PPYY
ITCH,NEDD4
0.8102
More...
Q5JSJ4
Integrator complex subunit 6-like
ITCH
424:427
PPYY
ITCH,NEDD4
0.9555
More...