DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPTSS
Uniprot ID:
Q96DN6
Source protein:
Methyl-CpG-binding domain protein 6
Source gene:
MBD6
Class:
DEG_SPOP_SBC_1
Location:
705:709
E3 ligase:
SPOP
DEGRON score:
0.8542
ASA_SCORE:
89.08
COIL:
0.9682
CONS_SCORE:
0.4014
DSS_SCORE:
0.6952
HELIX:
0.0126
FCONS_SCORE:
0.865
RIG_SCORE:
0.5423
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A719T
TCGA-AA-A010
COAD
TCGA
PPTSS
DEG_SPOP_SBC_1
0.0556
p.T712M
TCGA-AP-A1DM
UCEC
TCGA
PPTSS
DEG_SPOP_SBC_1
0.25
p.T712M
DO43106
UCEC
ICGC
PPTSS
DEG_SPOP_SBC_1
0.25
p.T712M
SIDM01139
Pancreatic Carcinoma
GDSC
PPTSS
DEG_SPOP_SBC_1
0.25
p.T712M
PANC-02-03
pancreas
COSMIC
PPTSS
DEG_SPOP_SBC_1
0.25
p.A700V
DO234272
ESAD
ICGC
PPTSS
DEG_SPOP_SBC_1
0.1944
p.V697F
DO228900
LICA
ICGC
PPTSS
DEG_SPOP_SBC_1
0.1111
p.T714A
SIDM01149
Small Cell Lung Carcinoma
GDSC
PPTSS
DEG_SPOP_SBC_1
0.1944
p.T714A
ACH-001365
Lung Cancer
CCLE
PPTSS
DEG_SPOP_SBC_1
0.1944
p.T714A
NCI-H847
lung
COSMIC
PPTSS
DEG_SPOP_SBC_1
0.1944
p.A713T
SIDM00217
Colorectal Carcinoma
GDSC
PPTSS
DEG_SPOP_SBC_1
0.2222
p.A713T
ACH-000999
Colon/Colorectal Cancer
CCLE
PPTSS
DEG_SPOP_SBC_1
0.2222
p.A713T
SNU-1040
large_intestine
COSMIC
PPTSS
DEG_SPOP_SBC_1
0.2222
p.S709N
SIDM00145
T-Lymphoblastic Leukemia
GDSC
PPTSS
DEG_SPOP_SBC_1
0.7069
p.S709N
ACH-001127
Leukemia
CCLE
PPTSS
DEG_SPOP_SBC_1
0.7069
p.S709N
MOLT-4
haematopoietic_and_lymphoid_tissue
COSMIC
PPTSS
DEG_SPOP_SBC_1
0.7069
Drug responses associated with MBD6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14773
Tripeptidyl-peptidase 1
DEG_SPOP_SBC_1
177:181
PPTSS
SPOP
0.9584
More...
O15178
T-box transcription factor T
DEG_SPOP_SBC_1
340:344
PPTSS
SPOP
0.6236
More...
O60641
Clathrin coat assembly protein AP180
DEG_SPOP_SBC_1
819:823
PPTSS
SPOP
0.9708
More...
P49750
YLP motif-containing protein 1
DEG_SPOP_SBC_1
176:180
PPTSS
SPOP
0.6895
More...
P52333
Tyrosine-protein kinase JAK3
DEG_SPOP_SBC_1
494:498
PPTSS
SPOP
0.8529
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3890:3894
PPTSS
SPOP
0.5277
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
368:372
PPTSS
SPOP
0.8864
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1119:1123
PPTSS
SPOP
0.925
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1496:1500
PPTSS
SPOP
0.9496
More...
Q15311
RalA-binding protein 1
DEG_SPOP_SBC_1
7:11
PPTSS
SPOP
0.9992
More...
Q7Z2Z1
Treslin
DEG_SPOP_SBC_1
1228:1232
PPTSS
SPOP
0.9477
More...
Q7Z6G8
Ankyrin repeat and sterile alpha motif domain-containing protein 1B
DEG_SPOP_SBC_1
567:571
PPTSS
SPOP
0.9694
More...
Q8TCX5
Rhophilin-1
DEG_SPOP_SBC_1
384:388
PPTSS
SPOP
0.7809
More...
Q93074
Mediator of RNA polymerase II transcription subunit 12
DEG_SPOP_SBC_1
336:340
PPTSS
SPOP
0.7185
More...
Q9H1J1
Regulator of nonsense transcripts 3A
DEG_SPOP_SBC_1
45:49
PPTSS
SPOP
0.9468
More...
Q9H2S1
Small conductance calcium-activated potassium channel protein 2
DEG_SPOP_SBC_1
572:576
PPTSS
SPOP
0.9415
More...
Q9HBB8
Cadherin-related family member 5
DEG_SPOP_SBC_1
512:516
PPTSS
SPOP
0.8871
More...
Q9HCI5
Melanoma-associated antigen E1
DEG_SPOP_SBC_1
141:145
PPTSS
SPOP
0.9976
More...
Q9HCJ0
Trinucleotide repeat-containing gene 6C protein
DEG_SPOP_SBC_1
1600:1604
PPTSS
SPOP
0.9908
More...
Q9NT68
Teneurin-2
DEG_SPOP_SBC_1
172:176
PPTSS
SPOP
0.9859
More...
Q6P499
NIPA-like protein 3
DEG_SPOP_SBC_1
15:19
PPTSS
SPOP
0.8666
More...
Q8N801
Protein STPG4
DEG_SPOP_SBC_1
187:191
PPTSS
SPOP
0.5486
More...
Q96DN6
Methyl-CpG-binding domain protein 6
DEG_SPOP_SBC_1
705:709
PPTSS
SPOP
0.8542
More...
Q6ZU65
Ubinuclein-2
DEG_SPOP_SBC_1
727:731
PPTSS
SPOP
0.971
More...
Q9Y4E6
WD repeat-containing protein 7
DEG_SPOP_SBC_1
936:940
PPTSS
SPOP
0.9515
More...