DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
PPTSS
Uniprot ID:
Q9H1J1
Source protein:
Regulator of nonsense transcripts 3A
Source gene:
UPF3A
Class:
DEG_SPOP_SBC_1
Location:
45:49
E3 ligase:
SPOP
DEGRON score:
0.9468
ASA_SCORE:
93.34
COIL:
0.9674
CONS_SCORE:
0.3548
DSS_SCORE:
0.8077
HELIX:
0.0192
FCONS_SCORE:
0.8808
RIG_SCORE:
0.5661
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G55S
DO50894
LICA
ICGC
PPTSS
DEG_SPOP_SBC_1
0.1667
p.G55S
DO229103
THCA
ICGC
PPTSS
DEG_SPOP_SBC_1
0.1667
p.E41V
DO27279
LUSC
ICGC
PPTSS
DEG_SPOP_SBC_1
0.2222
p.P59S
DO229221
THCA
ICGC
PPTSS
DEG_SPOP_SBC_1
0.0556
p.G57D
DO229242
THCA
ICGC
PPTSS
DEG_SPOP_SBC_1
0.1111
p.S48L
SIDM01003
T-Lymphoblastic Leukemia
GDSC
PPTSS
DEG_SPOP_SBC_1
0.7667
p.S48L
ACH-000101
Leukemia
CCLE
PPTSS
DEG_SPOP_SBC_1
0.7667
p.S48L
ACH-000700
Lung Cancer
CCLE
PPTSS
DEG_SPOP_SBC_1
0.7667
p.S48L
ACH-001411
Bladder Cancer
CCLE
PPTSS
DEG_SPOP_SBC_1
0.7667
p.G55R
ACH-001344
Neuroblastoma
CCLE
PPTSS
DEG_SPOP_SBC_1
0.1667
Drug responses associated with UPF3A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14773
Tripeptidyl-peptidase 1
DEG_SPOP_SBC_1
177:181
PPTSS
SPOP
0.9584
More...
O15178
T-box transcription factor T
DEG_SPOP_SBC_1
340:344
PPTSS
SPOP
0.6236
More...
O60641
Clathrin coat assembly protein AP180
DEG_SPOP_SBC_1
819:823
PPTSS
SPOP
0.9708
More...
P49750
YLP motif-containing protein 1
DEG_SPOP_SBC_1
176:180
PPTSS
SPOP
0.6895
More...
P52333
Tyrosine-protein kinase JAK3
DEG_SPOP_SBC_1
494:498
PPTSS
SPOP
0.8529
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3890:3894
PPTSS
SPOP
0.5277
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
368:372
PPTSS
SPOP
0.8864
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1119:1123
PPTSS
SPOP
0.925
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1496:1500
PPTSS
SPOP
0.9496
More...
Q15311
RalA-binding protein 1
DEG_SPOP_SBC_1
7:11
PPTSS
SPOP
0.9992
More...
Q7Z2Z1
Treslin
DEG_SPOP_SBC_1
1228:1232
PPTSS
SPOP
0.9477
More...
Q7Z6G8
Ankyrin repeat and sterile alpha motif domain-containing protein 1B
DEG_SPOP_SBC_1
567:571
PPTSS
SPOP
0.9694
More...
Q8TCX5
Rhophilin-1
DEG_SPOP_SBC_1
384:388
PPTSS
SPOP
0.7809
More...
Q93074
Mediator of RNA polymerase II transcription subunit 12
DEG_SPOP_SBC_1
336:340
PPTSS
SPOP
0.7185
More...
Q9H1J1
Regulator of nonsense transcripts 3A
DEG_SPOP_SBC_1
45:49
PPTSS
SPOP
0.9468
More...
Q9H2S1
Small conductance calcium-activated potassium channel protein 2
DEG_SPOP_SBC_1
572:576
PPTSS
SPOP
0.9415
More...
Q9HBB8
Cadherin-related family member 5
DEG_SPOP_SBC_1
512:516
PPTSS
SPOP
0.8871
More...
Q9HCI5
Melanoma-associated antigen E1
DEG_SPOP_SBC_1
141:145
PPTSS
SPOP
0.9976
More...
Q9HCJ0
Trinucleotide repeat-containing gene 6C protein
DEG_SPOP_SBC_1
1600:1604
PPTSS
SPOP
0.9908
More...
Q9NT68
Teneurin-2
DEG_SPOP_SBC_1
172:176
PPTSS
SPOP
0.9859
More...
Q6P499
NIPA-like protein 3
DEG_SPOP_SBC_1
15:19
PPTSS
SPOP
0.8666
More...
Q8N801
Protein STPG4
DEG_SPOP_SBC_1
187:191
PPTSS
SPOP
0.5486
More...
Q96DN6
Methyl-CpG-binding domain protein 6
DEG_SPOP_SBC_1
705:709
PPTSS
SPOP
0.8542
More...
Q6ZU65
Ubinuclein-2
DEG_SPOP_SBC_1
727:731
PPTSS
SPOP
0.971
More...
Q9Y4E6
WD repeat-containing protein 7
DEG_SPOP_SBC_1
936:940
PPTSS
SPOP
0.9515
More...