DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PRTSS
Uniprot ID:
O95196
Source protein:
Chondroitin sulfate proteoglycan 5
Source gene:
CSPG5
Class:
DEG_SPOP_SBC_1
Location:
494:498
E3 ligase:
SPOP
DEGRON score:
0.9445
ASA_SCORE:
80.44
COIL:
0.927
CONS_SCORE:
0.3008
DSS_SCORE:
0.4713
HELIX:
0.0478
FCONS_SCORE:
0.5551
RIG_SCORE:
0.6359
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R495S
TCGA-D3-A2J6
SKCM
TCGA
PRTSS
DEG_SPOP_SBC_1
0.6316
p.R495S
DO37901
SKCM
ICGC
PRTSS
DEG_SPOP_SBC_1
0.6316
p.T496I
TCGA-FP-7998
STAD
TCGA
PRTSS
DEG_SPOP_SBC_1
0.7078
p.T496I
DO38190
STAD
ICGC
PRTSS
DEG_SPOP_SBC_1
0.7078
p.S497Y
TCGA-H4-A2HQ
BLCA
TCGA
PRTSS
DEG_SPOP_SBC_1
0.712
p.S497Y
DO522
BLCA
ICGC
PRTSS
DEG_SPOP_SBC_1
0.712
p.R495C
DO234350
ESAD
ICGC
PRTSS
DEG_SPOP_SBC_1
0.719
p.R495C
DO51082
PRAD
ICGC
PRTSS
DEG_SPOP_SBC_1
0.719
p.P489S
DO222662
MELA
ICGC
PRTSS
DEG_SPOP_SBC_1
0.3056
p.K494N
DO40884
UCEC
ICGC
PRTSS
DEG_SPOP_SBC_1
0.6918
p.A505V
DO41199
UCEC
ICGC
PRTSS
DEG_SPOP_SBC_1
0.1389
p.H506D
SIDM00381
Cervical Carcinoma
GDSC
PRTSS
DEG_SPOP_SBC_1
0.1111
p.H506D
SKG-IIIa
cervix
COSMIC
PRTSS
DEG_SPOP_SBC_1
0.1111
p.R495H
SIDM01770
Gastric Carcinoma
GDSC
PRTSS
DEG_SPOP_SBC_1
0.7133
Drug responses associated with CSPG5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PRTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14526
F-BAR domain only protein 1
DEG_SPOP_SBC_1
416:420
PRTSS
SPOP
0.8831
More...
O95196
Chondroitin sulfate proteoglycan 5
DEG_SPOP_SBC_1
494:498
PRTSS
SPOP
0.9445
More...
P25054
Adenomatous polyposis coli protein
DEG_SPOP_SBC_1
2346:2350
PRTSS
SPOP
0.9898
More...
Q03111
Protein ENL
DEG_SPOP_SBC_1
316:320
PRTSS
SPOP
0.7245
More...
Q06455
Protein CBFA2T1
DEG_SPOP_SBC_1
66:70
PRTSS
SPOP
0.7313
More...
Q12778
Forkhead box protein O1
DEG_SPOP_SBC_1
315:319
PRTSS
SPOP
0.9972
More...
Q14162
Scavenger receptor class F member 1
DEG_SPOP_SBC_1
577:581
PRTSS
SPOP
0.8725
More...
Q6GPH4
XIAP-associated factor 1
DEG_SPOP_SBC_1
249:253
PRTSS
SPOP
0.8792
More...
Q6IQ55
Tau-tubulin kinase 2
DEG_SPOP_SBC_1
1161:1165
PRTSS
SPOP
0.8865
More...
Q6RVD6
Spermatogenesis-associated protein 8
DEG_SPOP_SBC_1
29:33
PRTSS
SPOP
0.8857
More...
Q92538
Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
DEG_SPOP_SBC_1
1462:1466
PRTSS
SPOP
0.9516
More...
Q96QH2
PML-RARA-regulated adapter molecule 1
DEG_SPOP_SBC_1
330:334
PRTSS
SPOP
0.9947
More...
Q9BRG2
SH2 domain-containing protein 3A
DEG_SPOP_SBC_1
176:180
PRTSS
SPOP
0.9677
More...
Q9C0B5
Palmitoyltransferase ZDHHC5
DEG_SPOP_SBC_1
581:585
PRTSS
SPOP
0.9948
More...
Q9H2D6
TRIO and F-actin-binding protein
DEG_SPOP_SBC_1
354:358
PRTSS
SPOP
0.9618
More...
Q9H2D6
TRIO and F-actin-binding protein
DEG_SPOP_SBC_1
778:782
PRTSS
SPOP
0.9406
More...
Q9H2D6
TRIO and F-actin-binding protein
DEG_SPOP_SBC_1
919:923
PRTSS
SPOP
0.9535
More...
Q9NYJ8
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2
DEG_SPOP_SBC_1
346:350
PRTSS
SPOP
0.9945
More...
Q9UIG0
Tyrosine-protein kinase BAZ1B
DEG_SPOP_SBC_1
461:465
PRTSS
SPOP
0.8829
More...
Q9ULC8
Palmitoyltransferase ZDHHC8
DEG_SPOP_SBC_1
639:643
PRTSS
SPOP
0.9525
More...
Q6ZVL6
UPF0606 protein KIAA1549L
DEG_SPOP_SBC_1
610:614
PRTSS
SPOP
0.9746
More...
Q76KD6
Speriolin
DEG_SPOP_SBC_1
390:394
PRTSS
SPOP
0.8987
More...
Q9BY89
Uncharacterized protein KIAA1671
DEG_SPOP_SBC_1
124:128
PRTSS
SPOP
0.9961
More...