DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
ARSSS
Uniprot ID:
Q13428
Source protein:
Treacle protein
Source gene:
TCOF1
Class:
DEG_SPOP_SBC_1
Location:
994:998
E3 ligase:
SPOP
DEGRON score:
0.9945
ASA_SCORE:
96.64
COIL:
0.9508
CONS_SCORE:
0.4896
DSS_SCORE:
0.7006
HELIX:
0.0304
FCONS_SCORE:
0.9883
RIG_SCORE:
0.5321
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S990L
TCGA-EE-A29T
SKCM
TCGA
ARSSS
DEG_SPOP_SBC_1
0.2222
p.R995S
TCGA-IR-A3LK
CESC
TCGA
ARSSS
DEG_SPOP_SBC_1
0.6316
p.R995S
DO44299
CESC
ICGC
ARSSS
DEG_SPOP_SBC_1
0.6316
p.E1004K
TCGA-IR-A3LK
CESC
TCGA
ARSSS
DEG_SPOP_SBC_1
0.1667
p.D1005N
DO234170
ESAD
ICGC
ARSSS
DEG_SPOP_SBC_1
0.1389
p.R988Q
SIDM01313
Colorectal Carcinoma
GDSC
ARSSS
DEG_SPOP_SBC_1
0.1667
p.S992N
SIDM01652
Non-Cancerous
GDSC
ARSSS
DEG_SPOP_SBC_1
0.2778
p.S992N
SIDM00187
Kidney Carcinoma
GDSC
ARSSS
DEG_SPOP_SBC_1
0.2778
p.S992N
ACH-002352
Non-Cancerous
CCLE
ARSSS
DEG_SPOP_SBC_1
0.2778
p.V999I
SNU-1040
large_intestine
COSMIC
ARSSS
DEG_SPOP_SBC_1
0.75
Drug responses associated with TCOF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of ARSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6NL88
Protein shisa-7
DEG_SPOP_SBC_1
243:247
ARSSS
SPOP
0.8952
More...
O43918
Autoimmune regulator
DEG_SPOP_SBC_1
246:250
ARSSS
SPOP
0.8679
More...
O75152
Zinc finger CCCH domain-containing protein 11A
DEG_SPOP_SBC_1
395:399
ARSSS
SPOP
0.9781
More...
O94929
Actin-binding LIM protein 3
DEG_SPOP_SBC_1
533:537
ARSSS
SPOP
0.6596
More...
P08047
Transcription factor Sp1
DEG_SPOP_SBC_1
38:42
ARSSS
SPOP
0.9685
More...
P0C1S8
Wee1-like protein kinase 2
DEG_SPOP_SBC_1
553:557
ARSSS
SPOP
0.9215
More...
P10109
Adrenodoxin, mitochondrial
DEG_SPOP_SBC_1
59:63
ARSSS
SPOP
0.9801
More...
P41594
Metabotropic glutamate receptor 5
DEG_SPOP_SBC_1
1048:1052
ARSSS
SPOP
0.9696
More...
Q13428
Treacle protein
DEG_SPOP_SBC_1
994:998
ARSSS
SPOP
0.9945
More...
Q14721
Potassium voltage-gated channel subfamily B member 1
DEG_SPOP_SBC_1
515:519
ARSSS
SPOP
0.707
More...
Q5VWQ8
Disabled homolog 2-interacting protein
DEG_SPOP_SBC_1
724:728
ARSSS
SPOP
0.8774
More...
Q7Z591
Microtubule organization protein AKNA
DEG_SPOP_SBC_1
1157:1161
ARSSS
SPOP
0.9961
More...
Q86YJ5
E3 ubiquitin-protein ligase MARCHF9
DEG_SPOP_SBC_1
329:333
ARSSS
SPOP
0.8149
More...
Q86Z20
Coiled-coil domain-containing protein 125
DEG_SPOP_SBC_1
5:9
ARSSS
SPOP
0.7355
More...
Q8NCE2
Myotubularin-related protein 14
DEG_SPOP_SBC_1
510:514
ARSSS
SPOP
0.7067
More...
Q96AY4
Tetratricopeptide repeat protein 28
DEG_SPOP_SBC_1
2237:2241
ARSSS
SPOP
0.9436
More...
Q96S55
ATPase WRNIP1
DEG_SPOP_SBC_1
129:133
ARSSS
SPOP
0.9833
More...
Q9BX66
Sorbin and SH3 domain-containing protein 1
DEG_SPOP_SBC_1
502:506
ARSSS
SPOP
0.9877
More...
Q9H773
dCTP pyrophosphatase 1
DEG_SPOP_SBC_1
134:138
ARSSS
SPOP
0.8753
More...
Q9NP85
Podocin
DEG_SPOP_SBC_1
5:9
ARSSS
SPOP
0.843
More...
Q9P246
Stromal interaction molecule 2
DEG_SPOP_SBC_1
507:511
ARSSS
SPOP
0.9992
More...
Q9UPN4
Centrosomal protein of 131 kDa
DEG_SPOP_SBC_1
142:146
ARSSS
SPOP
0.9791
More...
Q9Y6R9
Centrosomal protein CCDC61
DEG_SPOP_SBC_1
313:317
ARSSS
SPOP
0.8882
More...
Q86UU1
Pleckstrin homology-like domain family B member 1
DEG_SPOP_SBC_1
287:291
ARSSS
SPOP
0.9364
More...
Q92610
Zinc finger protein 592
DEG_SPOP_SBC_1
953:957
ARSSS
SPOP
0.8742
More...
A6NNA2
Serine/arginine repetitive matrix protein 3
DEG_SPOP_SBC_1
426:430
ARSSS
SPOP
0.73
More...
B2RC85
Radial spoke head 10 homolog B2
DEG_SPOP_SBC_1
693:697
ARSSS
SPOP
0.9652
More...
E7EW31
Proline-rich basic protein 1
DEG_SPOP_SBC_1
782:786
ARSSS
SPOP
0.9376
More...
P0C881
Radial spoke head 10 homolog B
DEG_SPOP_SBC_1
693:697
ARSSS
SPOP
0.9698
More...
Q0P670
Uncharacterized protein SPEM2
DEG_SPOP_SBC_1
475:479
ARSSS
SPOP
0.6316
More...