DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
PGSST
Uniprot ID:
O60741
Source protein:
Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
Source gene:
HCN1
Class:
DEG_SPOP_SBC_1
Location:
758:762
E3 ligase:
SPOP
DEGRON score:
0.9855
ASA_SCORE:
75.56
COIL:
0.9636
CONS_SCORE:
0.2263
DSS_SCORE:
0.9263
HELIX:
0.018
FCONS_SCORE:
0.8751
RIG_SCORE:
0.4306
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q772H
TCGA-17-Z055
LUAD
TCGA
PGSST
DEG_SPOP_SBC_1
0.0556
p.P748L
TCGA-17-Z062
LUAD
TCGA
PGSST
DEG_SPOP_SBC_1
0.0556
p.P748L
DO23543
LIRI
ICGC
PGSST
DEG_SPOP_SBC_1
0.0556
p.T771K
TCGA-55-8203
LUAD
TCGA
PGSST
DEG_SPOP_SBC_1
0.5278
p.T771K
DO218928
LUAD
ICGC
PGSST
DEG_SPOP_SBC_1
0.5278
p.S770G
TCGA-66-2791
LUSC
TCGA
PGSST
DEG_SPOP_SBC_1
0.5556
p.S770G
DO231127
LUSC
ICGC
PGSST
DEG_SPOP_SBC_1
0.5556
p.S770G
DO26435
LUSC
ICGC
PGSST
DEG_SPOP_SBC_1
0.5556
p.T762K
TCGA-92-7340
LUSC
TCGA
PGSST
DEG_SPOP_SBC_1
0.7306
p.T762K
DO26775
LUSC
ICGC
PGSST
DEG_SPOP_SBC_1
0.7306
p.N765H
TCGA-A6-2674
COAD
TCGA
PGSST
DEG_SPOP_SBC_1
0.25
p.N765H
DO7819
COAD
ICGC
PGSST
DEG_SPOP_SBC_1
0.25
p.T762M
TCGA-CQ-5324
HNSC
TCGA
PGSST
DEG_SPOP_SBC_1
0.7423
p.T762M
DO233210
GACA
ICGC
PGSST
DEG_SPOP_SBC_1
0.7423
p.T762M
DO14383
HNSC
ICGC
PGSST
DEG_SPOP_SBC_1
0.7423
p.E766K
TCGA-DD-AAE3
LIHC
TCGA
PGSST
DEG_SPOP_SBC_1
0.2222
p.E766K
TCGA-EB-A3XC
SKCM
TCGA
PGSST
DEG_SPOP_SBC_1
0.2222
p.E766K
TCGA-GF-A4EO
SKCM
TCGA
PGSST
DEG_SPOP_SBC_1
0.2222
p.E766K
TCGA-KQ-A41S
BLCA
TCGA
PGSST
DEG_SPOP_SBC_1
0.2222
p.E766K
DO223593
BLCA
ICGC
PGSST
DEG_SPOP_SBC_1
0.2222
p.E766K
DO52258
LIHC
ICGC
PGSST
DEG_SPOP_SBC_1
0.2222
p.E766K
DO37579
SKCM
ICGC
PGSST
DEG_SPOP_SBC_1
0.2222
p.E766K
DO47559
SKCM
ICGC
PGSST
DEG_SPOP_SBC_1
0.2222
p.T771M
TCGA-DF-A2KU
UCEC
TCGA
PGSST
DEG_SPOP_SBC_1
0.5278
p.T771M
TCGA-EY-A215
UCEC
TCGA
PGSST
DEG_SPOP_SBC_1
0.5278
p.T771M
TCGA-L5-A891
ESCA
TCGA
PGSST
DEG_SPOP_SBC_1
0.5278
p.T771M
TCGA-NK-A5CX
LUSC
TCGA
PGSST
DEG_SPOP_SBC_1
0.5278
p.T771M
DO233829
GACA
ICGC
PGSST
DEG_SPOP_SBC_1
0.5278
p.T771M
DO219211
LUSC
ICGC
PGSST
DEG_SPOP_SBC_1
0.5278
p.T771M
DO223286
UCEC
ICGC
PGSST
DEG_SPOP_SBC_1
0.5278
p.T771M
DO42665
UCEC
ICGC
PGSST
DEG_SPOP_SBC_1
0.5278
p.P763Q
TCGA-EB-A299
SKCM
TCGA
PGSST
DEG_SPOP_SBC_1
0.3056
p.P763Q
DO37794
SKCM
ICGC
PGSST
DEG_SPOP_SBC_1
0.3056
p.P763S
TCGA-FR-A8YC
SKCM
TCGA
PGSST
DEG_SPOP_SBC_1
0.3056
p.P763S
DO50301
SKCM
ICGC
PGSST
DEG_SPOP_SBC_1
0.3056
p.P763L
TCGA-OL-A6VQ
BRCA
TCGA
PGSST
DEG_SPOP_SBC_1
0.3056
p.P763L
DO51214
BRCA
ICGC
PGSST
DEG_SPOP_SBC_1
0.3056
p.P763L
DO228838
MALY
ICGC
PGSST
DEG_SPOP_SBC_1
0.3056
p.P763L
DO50421
PRAD
ICGC
PGSST
DEG_SPOP_SBC_1
0.3056
p.K769N
DO1073
BRCA
ICGC
PGSST
DEG_SPOP_SBC_1
0.25
p.T771A
DO234340
ESAD
ICGC
PGSST
DEG_SPOP_SBC_1
0.5278
p.V767A
DO233804
GACA
ICGC
PGSST
DEG_SPOP_SBC_1
0.1944
p.S760I
SIDM00403
T-Lymphoblastic Leukemia
GDSC
PGSST
DEG_SPOP_SBC_1
0.7341
p.S760I
ACH-000636
Leukemia
CCLE
PGSST
DEG_SPOP_SBC_1
0.7341
p.S760I
RPMI-8402
haematopoietic_and_lymphoid_tissue
COSMIC
PGSST
DEG_SPOP_SBC_1
0.7341
p.T771S
ACH-001664
Gastric Cancer
CCLE
PGSST
DEG_SPOP_SBC_1
0.5278
Drug responses associated with HCN1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PGSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15061
Synemin
DEG_SPOP_SBC_1
1302:1306
PGSST
SPOP
0.9781
More...
O60741
Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
DEG_SPOP_SBC_1
758:762
PGSST
SPOP
0.9855
More...
O94875
Sorbin and SH3 domain-containing protein 2
DEG_SPOP_SBC_1
285:289
PGSST
SPOP
0.99
More...
O95665
Neurotensin receptor type 2
DEG_SPOP_SBC_1
246:250
PGSST
SPOP
0.8617
More...
P17948
Vascular endothelial growth factor receptor 1
DEG_SPOP_SBC_1
711:715
PGSST
SPOP
0.6649
More...
P18146
Early growth response protein 1
DEG_SPOP_SBC_1
477:481
PGSST
SPOP
0.7875
More...
P49639
Homeobox protein Hox-A1
DEG_SPOP_SBC_1
323:327
PGSST
SPOP
0.9865
More...
P52799
Ephrin-B2
DEG_SPOP_SBC_1
204:208
PGSST
SPOP
0.573
More...
Q13164
Mitogen-activated protein kinase 7
DEG_SPOP_SBC_1
676:680
PGSST
SPOP
0.9143
More...
Q14541
Hepatocyte nuclear factor 4-gamma
DEG_SPOP_SBC_1
122:126
PGSST
SPOP
0.5473
More...
Q5VT52
Regulation of nuclear pre-mRNA domain-containing protein 2
DEG_SPOP_SBC_1
759:763
PGSST
SPOP
0.9962
More...
Q5W0B1
ORC ubiquitin ligase 1
DEG_SPOP_SBC_1
302:306
PGSST
SPOP
0.9546
More...
Q7Z5P9
Mucin-19
DEG_SPOP_SBC_1
1949:1953
PGSST
SPOP
0.9296
More...
Q86UW9
Probable E3 ubiquitin-protein ligase DTX2
DEG_SPOP_SBC_1
294:298
PGSST
SPOP
0.9802
More...
Q8IVI9
Nostrin
DEG_SPOP_SBC_1
426:430
PGSST
SPOP
0.6311
More...
Q8TER5
Rho guanine nucleotide exchange factor 40
DEG_SPOP_SBC_1
1488:1492
PGSST
SPOP
0.9989
More...
Q96HA1
Nuclear envelope pore membrane protein POM 121
DEG_SPOP_SBC_1
1118:1122
PGSST
SPOP
0.981
More...
Q96L96
Alpha-protein kinase 3
DEG_SPOP_SBC_1
77:81
PGSST
SPOP
0.9946
More...
Q96M63
Outer dynein arm-docking complex subunit 1
DEG_SPOP_SBC_1
660:664
PGSST
SPOP
0.9788
More...
Q9NZB2
Constitutive coactivator of PPAR-gamma-like protein 1
DEG_SPOP_SBC_1
454:458
PGSST
SPOP
0.9977
More...
Q9UKD1
Glucocorticoid modulatory element-binding protein 2
DEG_SPOP_SBC_1
495:499
PGSST
SPOP
0.6991
More...
Q9UPT9
Ubiquitin carboxyl-terminal hydrolase 22
DEG_SPOP_SBC_1
332:336
PGSST
SPOP
0.9585
More...
Q9UQC2
GRB2-associated-binding protein 2
DEG_SPOP_SBC_1
457:461
PGSST
SPOP
0.9866
More...
O75956
Cyclin-dependent kinase 2-associated protein 2
DEG_SPOP_SBC_1
14:18
PGSST
SPOP
0.9967
More...
Q96BN6
Primary cilium assembly protein FAM149B1
DEG_SPOP_SBC_1
386:390
PGSST
SPOP
0.948
More...
Q9C0E2
Exportin-4
DEG_SPOP_SBC_1
522:526
PGSST
SPOP
0.9799
More...
Q8NDD1
Uncharacterized protein C1orf131
DEG_SPOP_SBC_1
17:21
PGSST
SPOP
0.968
More...
Q92545
Transmembrane protein 131
DEG_SPOP_SBC_1
1572:1576
PGSST
SPOP
0.9337
More...
Q9ULL5
Proline-rich protein 12
DEG_SPOP_SBC_1
137:141
PGSST
SPOP
0.967
More...
Q5T035
Putative uncharacterized protein C9orf129
DEG_SPOP_SBC_1
103:107
PGSST
SPOP
0.9971
More...