DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PLSST
Uniprot ID:
O43525
Source protein:
Potassium voltage-gated channel subfamily KQT member 3
Source gene:
KCNQ3
Class:
DEG_SPOP_SBC_1
Location:
852:856
E3 ligase:
SPOP
DEGRON score:
0.9413
ASA_SCORE:
71.12
COIL:
0.8106
CONS_SCORE:
0.3592
DSS_SCORE:
0.6411
HELIX:
0.0808
FCONS_SCORE:
0.9533
RIG_SCORE:
0.6095
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L853V
TCGA-5L-AAT0
BRCA
TCGA
PLSST
DEG_SPOP_SBC_1
0.5654
p.T842M
TCGA-AA-3864
COAD
TCGA
PLSST
DEG_SPOP_SBC_1
0.0556
p.T842M
TCGA-CR-7399
HNSC
TCGA
PLSST
DEG_SPOP_SBC_1
0.0556
p.T842M
TCGA-VQ-A8P2
STAD
TCGA
PLSST
DEG_SPOP_SBC_1
0.0556
p.D862G
TCGA-B5-A0JY
UCEC
TCGA
PLSST
DEG_SPOP_SBC_1
0.1667
p.G857V
TCGA-BF-A1PZ
SKCM
TCGA
PLSST
DEG_SPOP_SBC_1
0.3056
p.G857V
TCGA-D3-A2J8
SKCM
TCGA
PLSST
DEG_SPOP_SBC_1
0.3056
p.T866A
TCGA-E2-A153
BRCA
TCGA
PLSST
DEG_SPOP_SBC_1
0.0556
p.T866A
SIDM00438
B-Lymphoblastic Leukemia
GDSC
PLSST
DEG_SPOP_SBC_1
0.0556
p.T866A
ACH-002275
Leukemia
CCLE
PLSST
DEG_SPOP_SBC_1
0.0556
p.T866A
MN-60
haematopoietic_and_lymphoid_tissue
COSMIC
PLSST
DEG_SPOP_SBC_1
0.0556
p.G857E
TCGA-EB-A41A
SKCM
TCGA
PLSST
DEG_SPOP_SBC_1
0.3056
p.S863L
TCGA-GN-A266
SKCM
TCGA
PLSST
DEG_SPOP_SBC_1
0.1389
p.S863L
ACH-000198
Leukemia
CCLE
PLSST
DEG_SPOP_SBC_1
0.1389
p.T866N
SIDM00935
Other Solid Cancers
GDSC
PLSST
DEG_SPOP_SBC_1
0.0556
p.T866N
ACH-002091
Skin Cancer
CCLE
PLSST
DEG_SPOP_SBC_1
0.0556
p.T866N
CAL-39
vulva
COSMIC
PLSST
DEG_SPOP_SBC_1
0.0556
p.T856S
SIDM00293
Small Cell Lung Carcinoma
GDSC
PLSST
DEG_SPOP_SBC_1
0.6005
p.T856S
ACH-002052
Lung Cancer
CCLE
PLSST
DEG_SPOP_SBC_1
0.6005
p.T856S
LU-139
lung
COSMIC
PLSST
DEG_SPOP_SBC_1
0.6005
p.P852S
SIDM00217
Colorectal Carcinoma
GDSC
PLSST
DEG_SPOP_SBC_1
0.6752
p.P852S
ACH-000999
Colon/Colorectal Cancer
CCLE
PLSST
DEG_SPOP_SBC_1
0.6752
p.P852S
SNU-1040
large_intestine
COSMIC
PLSST
DEG_SPOP_SBC_1
0.6752
p.T854N
CAL-39
vulva
COSMIC
PLSST
DEG_SPOP_SBC_1
0.7055
p.P855T
LS-411N
large_intestine
COSMIC
PLSST
DEG_SPOP_SBC_1
0.7031
p.T854A
MN-60
haematopoietic_and_lymphoid_tissue
COSMIC
PLSST
DEG_SPOP_SBC_1
0.7139
Drug responses associated with KCNQ3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PLSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15550
Lysine-specific demethylase 6A
DEG_SPOP_SBC_1
659:663
PLSST
SPOP
0.9969
More...
O43525
Potassium voltage-gated channel subfamily KQT member 3
DEG_SPOP_SBC_1
852:856
PLSST
SPOP
0.9413
More...
O95487
Protein transport protein Sec24B
DEG_SPOP_SBC_1
371:375
PLSST
SPOP
0.9973
More...
P58107
Epiplakin
DEG_SPOP_SBC_1
797:801
PLSST
SPOP
0.7149
More...
Q13873
Bone morphogenetic protein receptor type-2
DEG_SPOP_SBC_1
698:702
PLSST
SPOP
0.9891
More...
Q13950
Runt-related transcription factor 2
DEG_SPOP_SBC_1
320:324
PLSST
SPOP
0.9988
More...
Q15714
TSC22 domain family protein 1
DEG_SPOP_SBC_1
891:895
PLSST
SPOP
0.9403
More...
Q49AJ0
Protein FAM135B
DEG_SPOP_SBC_1
643:647
PLSST
SPOP
0.9487
More...
Q5M775
Cytospin-B
DEG_SPOP_SBC_1
342:346
PLSST
SPOP
0.9835
More...
Q66GS9
Centrosomal protein of 135 kDa
DEG_SPOP_SBC_1
1123:1127
PLSST
SPOP
0.9913
More...
Q69YN4
Protein virilizer homolog
DEG_SPOP_SBC_1
1757:1761
PLSST
SPOP
0.9993
More...
Q6P4R8
Nuclear factor related to kappa-B-binding protein
DEG_SPOP_SBC_1
336:340
PLSST
SPOP
0.984
More...
Q7Z5J4
Retinoic acid-induced protein 1
DEG_SPOP_SBC_1
1665:1669
PLSST
SPOP
0.9861
More...
Q8IW45
ATP-dependent
DEG_SPOP_SBC_1
63:67
PLSST
SPOP
0.9107
More...
Q8NDV7
Trinucleotide repeat-containing gene 6A protein
DEG_SPOP_SBC_1
1684:1688
PLSST
SPOP
0.9408
More...
Q92546
RAB6A-GEF complex partner protein 2
DEG_SPOP_SBC_1
306:310
PLSST
SPOP
0.6123
More...
Q96N21
AP-4 complex accessory subunit Tepsin
DEG_SPOP_SBC_1
393:397
PLSST
SPOP
0.9714
More...
Q96PX1
E3 ubiquitin ligase RNF157
DEG_SPOP_SBC_1
499:503
PLSST
SPOP
0.976
More...
Q9H7S9
Zinc finger protein 703
DEG_SPOP_SBC_1
71:75
PLSST
SPOP
0.9941
More...
Q9NR46
Endophilin-B2
DEG_SPOP_SBC_1
295:299
PLSST
SPOP
0.6401
More...
Q9P0X4
Voltage-dependent T-type calcium channel subunit alpha-1I
DEG_SPOP_SBC_1
1908:1912
PLSST
SPOP
0.9775
More...
Q9Y2W1
Thyroid hormone receptor-associated protein 3
DEG_SPOP_SBC_1
276:280
PLSST
SPOP
0.9859
More...
Q5VVH5
Interleukin-1 receptor-associated kinase 1-binding protein 1
DEG_SPOP_SBC_1
40:44
PLSST
SPOP
0.9797
More...
Q8WZ64
Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2
DEG_SPOP_SBC_1
452:456
PLSST
SPOP
0.8986
More...
Q9Y5F7
Protocadherin gamma-C4
DEG_SPOP_SBC_1
544:548
PLSST
SPOP
0.8845
More...