DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PLTSS
Uniprot ID:
Q99633
Source protein:
Pre-mRNA-splicing factor 18
Source gene:
PRPF18
Class:
DEG_SPOP_SBC_1
Location:
58:62
E3 ligase:
SPOP
DEGRON score:
0.9188
ASA_SCORE:
87.9
COIL:
0.9138
CONS_SCORE:
0.4776
DSS_SCORE:
0.5247
HELIX:
0.063
FCONS_SCORE:
1.0216
RIG_SCORE:
0.6688
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L68R
TCGA-AA-A010
COAD
TCGA
PLTSS
DEG_SPOP_SBC_1
0.1667
p.S62L
TCGA-AP-A0LI
UCEC
TCGA
PLTSS
DEG_SPOP_SBC_1
0.7667
p.S62L
DO234232
ESAD
ICGC
PLTSS
DEG_SPOP_SBC_1
0.7667
p.S62L
DO43658
UCEC
ICGC
PLTSS
DEG_SPOP_SBC_1
0.7667
p.L59S
TCGA-B5-A1MX
UCEC
TCGA
PLTSS
DEG_SPOP_SBC_1
0.6556
p.L59S
DO41999
UCEC
ICGC
PLTSS
DEG_SPOP_SBC_1
0.6556
p.L68F
TCGA-EE-A3JE
SKCM
TCGA
PLTSS
DEG_SPOP_SBC_1
0.1667
p.L68F
DO48766
SKCM
ICGC
PLTSS
DEG_SPOP_SBC_1
0.1667
p.E72K
TCGA-HU-A4G8
STAD
TCGA
PLTSS
DEG_SPOP_SBC_1
0.0556
p.E72K
DO47819
STAD
ICGC
PLTSS
DEG_SPOP_SBC_1
0.0556
p.D55Y
DO229025
LICA
ICGC
PLTSS
DEG_SPOP_SBC_1
0.25
p.D55Y
DO229268
THCA
ICGC
PLTSS
DEG_SPOP_SBC_1
0.25
p.E53G
SIDM00657
Acute Myeloid Leukemia
GDSC
PLTSS
DEG_SPOP_SBC_1
0.1944
p.E53G
SIDM00230
Small Cell Lung Carcinoma
GDSC
PLTSS
DEG_SPOP_SBC_1
0.1944
p.E53G
SIDM00968
Ovarian Carcinoma
GDSC
PLTSS
DEG_SPOP_SBC_1
0.1944
p.E53G
SIDM01650
Non-Cancerous
GDSC
PLTSS
DEG_SPOP_SBC_1
0.1944
p.E53G
SIDM00490
Glioma
GDSC
PLTSS
DEG_SPOP_SBC_1
0.1944
p.E53G
SIDM01215
Ovarian Carcinoma
GDSC
PLTSS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with PRPF18 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PLTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43586
Proline-serine-threonine phosphatase-interacting protein 1
DEG_SPOP_SBC_1
294:298
PLTSS
SPOP
0.9863
More...
O60284
Suppression of tumorigenicity 18 protein
DEG_SPOP_SBC_1
629:633
PLTSS
SPOP
0.9793
More...
O75563
Src kinase-associated phosphoprotein 2
DEG_SPOP_SBC_1
249:253
PLTSS
SPOP
0.9972
More...
O95486
Protein transport protein Sec24A
DEG_SPOP_SBC_1
226:230
PLTSS
SPOP
0.9934
More...
P15941
Mucin-1
DEG_SPOP_SBC_1
1024:1028
PLTSS
SPOP
0.8767
More...
P49736
DNA replication licensing factor MCM2
DEG_SPOP_SBC_1
23:27
PLTSS
SPOP
0.9038
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1038:1042
PLTSS
SPOP
0.6344
More...
Q15475
Homeobox protein SIX1
DEG_SPOP_SBC_1
274:278
PLTSS
SPOP
0.5507
More...
Q15691
Microtubule-associated protein RP/EB family member 1
DEG_SPOP_SBC_1
152:156
PLTSS
SPOP
0.9872
More...
Q17RY0
Cytoplasmic polyadenylation element-binding protein 4
DEG_SPOP_SBC_1
157:161
PLTSS
SPOP
0.9878
More...
Q5HYW2
NHS-like protein 2
DEG_SPOP_SBC_1
774:778
PLTSS
SPOP
0.9452
More...
Q69YQ0
Cytospin-A
DEG_SPOP_SBC_1
355:359
PLTSS
SPOP
0.9297
More...
Q6ZRS2
Helicase SRCAP
DEG_SPOP_SBC_1
254:258
PLTSS
SPOP
0.949
More...
Q7Z434
Mitochondrial antiviral-signaling protein
DEG_SPOP_SBC_1
189:193
PLTSS
SPOP
0.9989
More...
Q8NEP3
Dynein axonemal assembly factor 1
DEG_SPOP_SBC_1
671:675
PLTSS
SPOP
0.9436
More...
Q8WXI2
Connector enhancer of kinase suppressor of ras 2
DEG_SPOP_SBC_1
775:779
PLTSS
SPOP
0.8711
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
1750:1754
PLTSS
SPOP
0.9632
More...
Q96RU2
Ubiquitin carboxyl-terminal hydrolase 28
DEG_SPOP_SBC_1
514:518
PLTSS
SPOP
0.9579
More...
Q96RW7
Hemicentin-1
DEG_SPOP_SBC_1
2817:2821
PLTSS
SPOP
0.5877
More...
Q99633
Pre-mRNA-splicing factor 18
DEG_SPOP_SBC_1
58:62
PLTSS
SPOP
0.9188
More...
Q9BZE9
Tether containing UBX domain for GLUT4
DEG_SPOP_SBC_1
261:265
PLTSS
SPOP
0.9718
More...
Q9C0B0
RING finger protein unkempt homolog
DEG_SPOP_SBC_1
468:472
PLTSS
SPOP
0.7927
More...
Q9NPI1
Bromodomain-containing protein 7
DEG_SPOP_SBC_1
120:124
PLTSS
SPOP
0.9763
More...
Q9UDV6
Zinc finger protein 212
DEG_SPOP_SBC_1
17:21
PLTSS
SPOP
0.99
More...
Q9UHK0
Nuclear fragile X mental retardation-interacting protein 1
DEG_SPOP_SBC_1
49:53
PLTSS
SPOP
0.9611
More...
Q6ZMY3
SPOC domain-containing protein 1
DEG_SPOP_SBC_1
193:197
PLTSS
SPOP
0.8764
More...
Q8IWR0
Zinc finger CCCH domain-containing protein 7A
DEG_SPOP_SBC_1
347:351
PLTSS
SPOP
0.9188
More...
O94880
PHD finger protein 14
DEG_SPOP_SBC_1
568:572
PLTSS
SPOP
0.9962
More...