DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VGSSS
Uniprot ID:
Q9H5N1
Source protein:
Rab GTPase-binding effector protein 2
Source gene:
RABEP2
Class:
DEG_SPOP_SBC_1
Location:
243:247
E3 ligase:
SPOP
DEGRON score:
0.9275
ASA_SCORE:
75.82
COIL:
0.8502
CONS_SCORE:
0.2834
DSS_SCORE:
0.5202
HELIX:
0.0866
FCONS_SCORE:
0.7355
RIG_SCORE:
0.5497
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G244S
TCGA-CV-6942
HNSC
TCGA
VGSSS
DEG_SPOP_SBC_1
0.5882
p.G244S
DO15951
HNSC
ICGC
VGSSS
DEG_SPOP_SBC_1
0.5882
p.S248F
TCGA-EE-A2GU
SKCM
TCGA
VGSSS
DEG_SPOP_SBC_1
0.3056
p.S248F
DO37639
SKCM
ICGC
VGSSS
DEG_SPOP_SBC_1
0.3056
p.G242V
TCGA-EE-A3AA
SKCM
TCGA
VGSSS
DEG_SPOP_SBC_1
0.3056
p.G242V
TCGA-EL-A3TB
THCA
TCGA
VGSSS
DEG_SPOP_SBC_1
0.3056
p.G242V
DO37571
SKCM
ICGC
VGSSS
DEG_SPOP_SBC_1
0.3056
p.G242V
DO38901
THCA
ICGC
VGSSS
DEG_SPOP_SBC_1
0.3056
p.V243F
TCGA-FJ-A3ZE
BLCA
TCGA
VGSSS
DEG_SPOP_SBC_1
0.7068
p.V243F
DO484
BLCA
ICGC
VGSSS
DEG_SPOP_SBC_1
0.7068
p.I234V
TCGA-S9-A6TX
LGG
TCGA
VGSSS
DEG_SPOP_SBC_1
0.0833
p.I234V
DO50184
LGG
ICGC
VGSSS
DEG_SPOP_SBC_1
0.0833
p.S252R
TCGA-X6-A7WA
SARC
TCGA
VGSSS
DEG_SPOP_SBC_1
0.1944
p.S252R
DO220312
SARC
ICGC
VGSSS
DEG_SPOP_SBC_1
0.1944
p.S246N
DO233276
GACA
ICGC
VGSSS
DEG_SPOP_SBC_1
0.7069
p.L256P
DO233882
GACA
ICGC
VGSSS
DEG_SPOP_SBC_1
0.0833
p.R253H
DO229194
LMS
ICGC
VGSSS
DEG_SPOP_SBC_1
0.1667
p.L256R
DO35442
PACA
ICGC
VGSSS
DEG_SPOP_SBC_1
0.0833
p.S257I
DO229264
THCA
ICGC
VGSSS
DEG_SPOP_SBC_1
0.5
p.S245N
DO229221
THCA
ICGC
VGSSS
DEG_SPOP_SBC_1
0.7069
p.S257R
SIDM00334
Endometrial Carcinoma
GDSC
VGSSS
DEG_SPOP_SBC_1
0.5
p.S257R
ACH-000879
Endometrial/Uterine Cancer
CCLE
VGSSS
DEG_SPOP_SBC_1
0.5
p.S257R
MFE-296
endometrium
COSMIC
VGSSS
DEG_SPOP_SBC_1
0.5
p.P250S
SIDM01013
B-Cell Non-Hodgkin's Lymphoma
GDSC
VGSSS
DEG_SPOP_SBC_1
0.25
p.P250S
JVM-2
haematopoietic_and_lymphoid_tissue
COSMIC
VGSSS
DEG_SPOP_SBC_1
0.25
p.R251Q
STS-0421
soft_tissue
COSMIC
VGSSS
DEG_SPOP_SBC_1
0.2222
p.R240H
NCI-H128
lung
COSMIC
VGSSS
DEG_SPOP_SBC_1
0.25
Drug responses associated with RABEP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VGSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O94972
E3 ubiquitin-protein ligase TRIM37
DEG_SPOP_SBC_1
591:595
VGSSS
SPOP
0.7449
More...
P25025
C-X-C chemokine receptor type 2
DEG_SPOP_SBC_1
349:353
VGSSS
SPOP
0.8617
More...
Q05469
Hormone-sensitive lipase
DEG_SPOP_SBC_1
238:242
VGSSS
SPOP
0.9766
More...
Q15149
Plectin
DEG_SPOP_SBC_1
4387:4391
VGSSS
SPOP
0.9829
More...
Q5SXH7
Pleckstrin homology domain-containing family S member 1
DEG_SPOP_SBC_1
166:170
VGSSS
SPOP
0.9981
More...
Q5T5Y3
Calmodulin-regulated spectrin-associated protein 1
DEG_SPOP_SBC_1
1208:1212
VGSSS
SPOP
0.9095
More...
Q5VST9
Obscurin
DEG_SPOP_SBC_1
2777:2781
VGSSS
SPOP
0.6097
More...
Q6GQQ9
OTU domain-containing protein 7B
DEG_SPOP_SBC_1
472:476
VGSSS
SPOP
0.9978
More...
Q6IMN6
Caprin-2
DEG_SPOP_SBC_1
603:607
VGSSS
SPOP
0.9899
More...
Q8IWI9
MAX gene-associated protein
DEG_SPOP_SBC_1
1871:1875
VGSSS
SPOP
0.9665
More...
Q8NDV7
Trinucleotide repeat-containing gene 6A protein
DEG_SPOP_SBC_1
297:301
VGSSS
SPOP
0.9039
More...
Q92953
Potassium voltage-gated channel subfamily B member 2
DEG_SPOP_SBC_1
851:855
VGSSS
SPOP
0.9618
More...
Q99569
Plakophilin-4
DEG_SPOP_SBC_1
333:337
VGSSS
SPOP
0.9838
More...
Q99590
Protein SCAF11
DEG_SPOP_SBC_1
470:474
VGSSS
SPOP
0.9942
More...
Q9BSE4
Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein
DEG_SPOP_SBC_1
134:138
VGSSS
SPOP
0.9842
More...
Q9H5N1
Rab GTPase-binding effector protein 2
DEG_SPOP_SBC_1
243:247
VGSSS
SPOP
0.9275
More...
Q9H792
Inactive tyrosine-protein kinase PEAK1
DEG_SPOP_SBC_1
754:758
VGSSS
SPOP
0.9976
More...
Q9HAK2
Transcription factor COE2
DEG_SPOP_SBC_1
517:521
VGSSS
SPOP
0.9803
More...
Q9UHD9
Ubiquilin-2
DEG_SPOP_SBC_1
295:299
VGSSS
SPOP
0.9306
More...
Q9ULT8
E3 ubiquitin-protein ligase HECTD1
DEG_SPOP_SBC_1
1440:1444
VGSSS
SPOP
0.9873
More...
Q9UPZ9
Serine/threonine-protein kinase ICK
DEG_SPOP_SBC_1
541:545
VGSSS
SPOP
0.9539
More...
Q9UQR1
Zinc finger protein 148
DEG_SPOP_SBC_1
587:591
VGSSS
SPOP
0.95
More...
Q9Y6H8
Gap junction alpha-3 protein
DEG_SPOP_SBC_1
355:359
VGSSS
SPOP
0.9829
More...
Q9Y6V0
Protein piccolo
DEG_SPOP_SBC_1
1533:1537
VGSSS
SPOP
0.9666
More...
A6NEL2
Ankyrin repeat domain-containing protein SOWAHB
DEG_SPOP_SBC_1
738:742
VGSSS
SPOP
0.9911
More...
Q14582
Max dimerization protein 4
DEG_SPOP_SBC_1
174:178
VGSSS
SPOP
0.9872
More...
Q92576
PHD finger protein 3
DEG_SPOP_SBC_1
1545:1549
VGSSS
SPOP
0.8639
More...
Q8N5Q1
Golgi associated RAB2 interactor protein 5B
DEG_SPOP_SBC_1
869:873
VGSSS
SPOP
0.7404
More...