DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PATST
Uniprot ID:
Q96Q05
Source protein:
Trafficking protein particle complex subunit 9
Source gene:
TRAPPC9
Class:
DEG_SPOP_SBC_1
Location:
897:901
E3 ligase:
SPOP
DEGRON score:
0.7829
ASA_SCORE:
73.92
COIL:
0.8494
CONS_SCORE:
0.3511
DSS_SCORE:
0.1103
HELIX:
0.0674
FCONS_SCORE:
0.8029
RIG_SCORE:
0.7761
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.C898F
TCGA-44-6777
LUAD
TCGA
PATST
DEG_SPOP_SBC_1
0.7108
p.C898F
TCGA-78-8662
LUAD
TCGA
PATST
DEG_SPOP_SBC_1
0.7108
p.E900D
TCGA-AP-A1DV
UCEC
TCGA
PATST
DEG_SPOP_SBC_1
0.6758
p.E900D
TCGA-D1-A103
UCEC
TCGA
PATST
DEG_SPOP_SBC_1
0.6758
p.P897S
SW684
soft_tissue
COSMIC
PATST
DEG_SPOP_SBC_1
0.6752
p.L894M
TCGA-B5-A1MX
UCEC
TCGA
PATST
DEG_SPOP_SBC_1
0.25
p.S894N
ACH-000642
Non-Cancerous
CCLE
PATST
DEG_SPOP_SBC_1
0.25
p.E906K
DO10340
COAD
ICGC
PATST
DEG_SPOP_SBC_1
0.1944
p.L906F
SIDM00383
Gastric Carcinoma
GDSC
PATST
DEG_SPOP_SBC_1
0.1944
p.L906F
ACH-002198
Gastric Cancer
CCLE
PATST
DEG_SPOP_SBC_1
0.1944
p.L906F
SCH
stomach
COSMIC
PATST
DEG_SPOP_SBC_1
0.1944
Showing 1 to 11 of 11 entries
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Drug responses associated with TRAPPC9 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
No data available in table
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All proteins holding degron of PATST
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96KQ4
Apoptosis-stimulating of p53 protein 1
DEG_SPOP_SBC_1
860:864
PATST
SPOP
0.9349
More...
P15336
Cyclic AMP-dependent transcription factor ATF-2
DEG_SPOP_SBC_1
318:322
PATST
SPOP
0.9918
More...
P38935
DNA-binding protein SMUBP-2
DEG_SPOP_SBC_1
669:673
PATST
SPOP
0.9876
More...
Q04637
Eukaryotic translation initiation factor 4 gamma 1
DEG_SPOP_SBC_1
1115:1119
PATST
SPOP
0.9995
More...
P20719
Homeobox protein Hox-A5
DEG_SPOP_SBC_1
89:93
PATST
SPOP
0.973
More...
O43561
Linker for activation of T-cells family member 1
DEG_SPOP_SBC_1
170:174
PATST
SPOP
0.9982
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
4466:4470
PATST
SPOP
0.9678
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12043:12047
PATST
SPOP
0.7282
More...
P52948
Nuclear pore complex protein Nup98-Nup96
DEG_SPOP_SBC_1
71:75
PATST
SPOP
0.9475
More...
P37198
Nuclear pore glycoprotein p62
DEG_SPOP_SBC_1
50:54
PATST
SPOP
0.9962
More...
Q9C0D7
Probable ribonuclease ZC3H12C
DEG_SPOP_SBC_1
525:529
PATST
SPOP
0.9883
More...
Q9ULI3
Protein HEG homolog 1
DEG_SPOP_SBC_1
829:833
PATST
SPOP
0.9954
More...
Q86UE4
Protein LYRIC
DEG_SPOP_SBC_1
514:518
PATST
SPOP
0.987
More...
E7ERA6
RING finger protein 223
DEG_SPOP_SBC_1
234:238
PATST
SPOP
0.7877
More...
Q9Y3S1
Serine/threonine-protein kinase WNK2
DEG_SPOP_SBC_1
1438:1442
PATST
SPOP
0.9888
More...
Q7Z6B7
SLIT-ROBO Rho GTPase-activating protein 1
DEG_SPOP_SBC_1
1002:1006
PATST
SPOP
0.9965
More...
Q96Q05
Trafficking protein particle complex subunit 9
DEG_SPOP_SBC_1
897:901
PATST
SPOP
0.7829
More...
P15884
Transcription factor 4
DEG_SPOP_SBC_1
206:210
PATST
SPOP
0.9056
More...
Q15678
Tyrosine-protein phosphatase non-receptor type 14
DEG_SPOP_SBC_1
575:579
PATST
SPOP
0.999
More...
Q5T0B9
Zinc finger protein 362
DEG_SPOP_SBC_1
110:114
PATST
SPOP
0.6991
More...
Showing 1 to 20 of 20 entries
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