DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PLSTS
Uniprot ID:
Q70CQ3
Source protein:
Ubiquitin carboxyl-terminal hydrolase 30
Source gene:
USP30
Class:
DEG_SPOP_SBC_1
Location:
466:470
E3 ligase:
SPOP
DEGRON score:
0.5113
ASA_SCORE:
75.74
COIL:
0.8776
CONS_SCORE:
0.4592
DSS_SCORE:
0.3468
HELIX:
0.0682
FCONS_SCORE:
0.9851
RIG_SCORE:
0.6904
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D478G
TCGA-A5-A0G2
UCEC
TCGA
PLSTS
DEG_SPOP_SBC_1
0.1111
p.L474P
TCGA-BR-8591
STAD
TCGA
PLSTS
DEG_SPOP_SBC_1
0.2222
p.R457Q
TCGA-CG-4440
STAD
TCGA
PLSTS
DEG_SPOP_SBC_1
0.0833
p.R458Q
TCGA-EI-6507
READ
TCGA
PLSTS
DEG_SPOP_SBC_1
0.1111
p.R458W
TCGA-V5-A7RE
ESCA
TCGA
PLSTS
DEG_SPOP_SBC_1
0.1111
p.R470C
DO223075
ESCA
ICGC
PLSTS
DEG_SPOP_SBC_1
0.8301
p.R470C
DO40851
UCEC
ICGC
PLSTS
DEG_SPOP_SBC_1
0.8301
p.R470C
DO41199
UCEC
ICGC
PLSTS
DEG_SPOP_SBC_1
0.8301
p.A463T
DO41903
UCEC
ICGC
PLSTS
DEG_SPOP_SBC_1
0.25
p.L474M
SIDM01016
T-Lymphoblastic Leukemia
GDSC
PLSTS
DEG_SPOP_SBC_1
0.2222
p.L474M
Jurkat
haematopoietic_and_lymphoid_tissue
COSMIC
PLSTS
DEG_SPOP_SBC_1
0.2222
p.N471S
SIDM00194
Colorectal Carcinoma
GDSC
PLSTS
DEG_SPOP_SBC_1
0.3056
p.N471S
SIDM00383
Gastric Carcinoma
GDSC
PLSTS
DEG_SPOP_SBC_1
0.3056
p.N471S
SIDM00252
Biliary Tract Carcinoma
GDSC
PLSTS
DEG_SPOP_SBC_1
0.3056
p.N471S
SIDM01727
Chronic Myelogenous Leukemia
GDSC
PLSTS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with USP30 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PLSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00167
Eyes absent homolog 2
DEG_SPOP_SBC_1
196:200
PLSTS
SPOP
0.8269
More...
O95628
CCR4-NOT transcription complex subunit 4
DEG_SPOP_SBC_1
553:557
PLSTS
SPOP
0.8233
More...
P28562
Dual specificity protein phosphatase 1
DEG_SPOP_SBC_1
148:152
PLSTS
SPOP
0.9304
More...
Q53TQ3
INO80 complex subunit D
DEG_SPOP_SBC_1
214:218
PLSTS
SPOP
0.9858
More...
Q5THR3
EF-hand calcium-binding domain-containing protein 6
DEG_SPOP_SBC_1
119:123
PLSTS
SPOP
0.6545
More...
Q5XPI4
E3 ubiquitin-protein ligase RNF123
DEG_SPOP_SBC_1
698:702
PLSTS
SPOP
0.9944
More...
Q6UXF1
Transmembrane protein 108
DEG_SPOP_SBC_1
345:349
PLSTS
SPOP
0.979
More...
Q70CQ3
Ubiquitin carboxyl-terminal hydrolase 30
DEG_SPOP_SBC_1
466:470
PLSTS
SPOP
0.5113
More...
Q86UK5
Limbin
DEG_SPOP_SBC_1
112:116
PLSTS
SPOP
0.7993
More...
Q86Y82
Syntaxin-12
DEG_SPOP_SBC_1
90:94
PLSTS
SPOP
0.702
More...
Q8IY33
MICAL-like protein 2
DEG_SPOP_SBC_1
519:523
PLSTS
SPOP
0.9828
More...
Q8IY92
Structure-specific endonuclease subunit SLX4
DEG_SPOP_SBC_1
1448:1452
PLSTS
SPOP
0.9903
More...
Q8NEZ4
Histone-lysine N-methyltransferase 2C
DEG_SPOP_SBC_1
2661:2665
PLSTS
SPOP
0.8392
More...
Q8TEQ6
Gem-associated protein 5
DEG_SPOP_SBC_1
850:854
PLSTS
SPOP
0.9922
More...
Q96KQ4
Apoptosis-stimulating of p53 protein 1
DEG_SPOP_SBC_1
336:340
PLSTS
SPOP
0.9301
More...
Q96Q89
Kinesin-like protein KIF20B
DEG_SPOP_SBC_1
1584:1588
PLSTS
SPOP
0.9863
More...
Q99490
Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2
DEG_SPOP_SBC_1
1046:1050
PLSTS
SPOP
0.6945
More...
Q99570
Phosphoinositide 3-kinase regulatory subunit 4
DEG_SPOP_SBC_1
901:905
PLSTS
SPOP
0.9634
More...
Q9H2E6
Semaphorin-6A
DEG_SPOP_SBC_1
1018:1022
PLSTS
SPOP
0.9889
More...
Q9H706
GRB2-associated and regulator of MAPK protein 1
DEG_SPOP_SBC_1
542:546
PLSTS
SPOP
0.9196
More...
Q9HBL0
Tensin-1
DEG_SPOP_SBC_1
1075:1079
PLSTS
SPOP
0.9851
More...
Q9UBP5
Hairy/enhancer-of-split related with YRPW motif protein 2
DEG_SPOP_SBC_1
252:256
PLSTS
SPOP
0.7183
More...
Q6ZUB1
Spermatogenesis-associated protein 31E1
DEG_SPOP_SBC_1
1149:1153
PLSTS
SPOP
0.9944
More...
Q96HE9
Proline-rich protein 11
DEG_SPOP_SBC_1
350:354
PLSTS
SPOP
0.9951
More...
Q6ZU67
BEN domain-containing protein 4
DEG_SPOP_SBC_1
281:285
PLSTS
SPOP
0.8233
More...
Q5HYC2
Uncharacterized protein KIAA2026
DEG_SPOP_SBC_1
1617:1621
PLSTS
SPOP
0.5245
More...